Gene : Phvul.005G034000 P. vulgaris v2.1

Defline:  (1 of 3) PTHR13878:SF53 - CYTOKININ DEHYDROGENASE 6 Genomic Order:  334
Name:  ? Phvul.005G034000 Secondary Identifier:  ? PAC:37153686

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G034000 0.5kb upstream 0.5kb upstream 3333 true Chr05: 3166661-3169993 Phaseolus vulgaris
Phvul.005G034000 0.5kb upstream 0.5kb upstream 500 false Chr05: 3166661-3167160 Phaseolus vulgaris
Phvul.005G034000 0.5kb downstream 0.5kb downstream 3333 true Chr05: 3167161-3170493 Phaseolus vulgaris
Phvul.005G034000 0.5kb downstream 0.5kb downstream 500 false Chr05: 3169994-3170493 Phaseolus vulgaris
Phvul.005G034000 1.0kb upstream 1.0kb upstream 3833 true Chr05: 3166161-3169993 Phaseolus vulgaris
Phvul.005G034000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 3166161-3167160 Phaseolus vulgaris
Phvul.005G034000 1.0kb downstream 1.0kb downstream 3833 true Chr05: 3167161-3170993 Phaseolus vulgaris
Phvul.005G034000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 3169994-3170993 Phaseolus vulgaris
Phvul.005G034000 2.0kb upstream 2.0kb upstream 4833 true Chr05: 3165161-3169993 Phaseolus vulgaris
Phvul.005G034000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 3165161-3167160 Phaseolus vulgaris
Phvul.005G034000 2.0kb downstream 2.0kb downstream 4833 true Chr05: 3167161-3171993 Phaseolus vulgaris
Phvul.005G034000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 3169994-3171993 Phaseolus vulgaris
Phvul.005G034000 5.0kb upstream 5.0kb upstream 7833 true Chr05: 3162161-3169993 Phaseolus vulgaris
Phvul.005G034000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 3162161-3167160 Phaseolus vulgaris
Phvul.005G034000 5.0kb downstream 5.0kb downstream 7833 true Chr05: 3167161-3174993 Phaseolus vulgaris
Phvul.005G034000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 3169994-3174993 Phaseolus vulgaris
Phvul.005G034000 10.0kb upstream 10.0kb upstream 12833 true Chr05: 3157161-3169993 Phaseolus vulgaris
Phvul.005G034000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 3157161-3167160 Phaseolus vulgaris
Phvul.005G034000 10.0kb downstream 10.0kb downstream 12833 true Chr05: 3167161-3179993 Phaseolus vulgaris
Phvul.005G034000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 3169994-3179993 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297373 5265 Fabidae View MSA
124067544 5270 Rosid View MSA
123739719 5271 Pentapetalae View MSA
122789559 5272 Eudicot View MSA
122043660 5273 Angiosperm View MSA
121348628 5274 Embryophyte View MSA
123380946 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.23019 0.0 0.898003 Low  
cufflinks 0.310493 0.0 1.18211 Low  
cufflinks 3.31826 0.0 9.82754   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 3.36261 0.0 10.0587   High
cufflinks 0.222965 0.0 0.87058 Low  
cufflinks 0.84801 0.0 2.94371    
cufflinks 0.317671 0.0 1.20261 Low  
cufflinks 1.43509 0.0 4.69433    
cufflinks 0.148199 0.0 0.598757 Low Low
cufflinks 3.34258 0.0 9.99306   High

0 Strain