Gene : Phvul.005G038700 P. vulgaris v2.1
Defline:  (1 of 2) PTHR12452 - 42-9-9 PROTEIN-RELATED Genomic Order:  383
Name:  ? Phvul.005G038700 Secondary Identifier:  ? PAC:37152685
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G038700 0.5kb upstream 0.5kb upstream 1635 true Chr05: 3778675-3780309 Phaseolus vulgaris
Phvul.005G038700 0.5kb upstream 0.5kb upstream 500 false Chr05: 3778675-3779174 Phaseolus vulgaris
Phvul.005G038700 0.5kb downstream 0.5kb downstream 1635 true Chr05: 3779175-3780809 Phaseolus vulgaris
Phvul.005G038700 0.5kb downstream 0.5kb downstream 500 false Chr05: 3780310-3780809 Phaseolus vulgaris
Phvul.005G038700 1.0kb upstream 1.0kb upstream 2135 true Chr05: 3778175-3780309 Phaseolus vulgaris
Phvul.005G038700 1.0kb upstream 1.0kb upstream 1000 false Chr05: 3778175-3779174 Phaseolus vulgaris
Phvul.005G038700 1.0kb downstream 1.0kb downstream 2135 true Chr05: 3779175-3781309 Phaseolus vulgaris
Phvul.005G038700 1.0kb downstream 1.0kb downstream 1000 false Chr05: 3780310-3781309 Phaseolus vulgaris
Phvul.005G038700 2.0kb upstream 2.0kb upstream 3135 true Chr05: 3777175-3780309 Phaseolus vulgaris
Phvul.005G038700 2.0kb upstream 2.0kb upstream 2000 false Chr05: 3777175-3779174 Phaseolus vulgaris
Phvul.005G038700 2.0kb downstream 2.0kb downstream 3135 true Chr05: 3779175-3782309 Phaseolus vulgaris
Phvul.005G038700 2.0kb downstream 2.0kb downstream 2000 false Chr05: 3780310-3782309 Phaseolus vulgaris
Phvul.005G038700 5.0kb upstream 5.0kb upstream 6135 true Chr05: 3774175-3780309 Phaseolus vulgaris
Phvul.005G038700 5.0kb upstream 5.0kb upstream 5000 false Chr05: 3774175-3779174 Phaseolus vulgaris
Phvul.005G038700 5.0kb downstream 5.0kb downstream 6135 true Chr05: 3779175-3785309 Phaseolus vulgaris
Phvul.005G038700 5.0kb downstream 5.0kb downstream 5000 false Chr05: 3780310-3785309 Phaseolus vulgaris
Phvul.005G038700 10.0kb upstream 10.0kb upstream 11135 true Chr05: 3769175-3780309 Phaseolus vulgaris
Phvul.005G038700 10.0kb upstream 10.0kb upstream 10000 false Chr05: 3769175-3779174 Phaseolus vulgaris
Phvul.005G038700 10.0kb downstream 10.0kb downstream 11135 true Chr05: 3779175-3790309 Phaseolus vulgaris
Phvul.005G038700 10.0kb downstream 10.0kb downstream 10000 false Chr05: 3780310-3790309 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122251904 5265 Fabidae Singleton cluster - no MSA
124062301 5270 Rosid View MSA
123739980 5271 Pentapetalae View MSA
122791634 5272 Eudicot View MSA
122046977 5273 Angiosperm View MSA
121346988 5274 Embryophyte View MSA
123427976 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.62791 0.0 9.24879    
cufflinks 1.8397 0.0 6.70374    
cufflinks 2.20337 0.0 7.88289    
cufflinks 0.925793 0.0 3.57838    
cufflinks 6.71865 0.0 21.3846    
cufflinks 0.235345 0.0 1.01549 Low Low
cufflinks 1.5368 0.0 5.67576    
cufflinks 4.61199 0.0 15.1973    
cufflinks 0.651686 0.0 2.579    
cufflinks 20.9261 0.0 58.7691   High
cufflinks 2.37373 0.0 8.46585    

0 Strain