Gene : Phvul.005G038800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12585:SF36 - SISTER CHROMATID COHESION 1 PROTEIN 3 Genomic Order:  384
Name:  ? Phvul.005G038800 Secondary Identifier:  ? PAC:37153669
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G038800 0.5kb upstream 0.5kb upstream 6214 true Chr05: 3780361-3786574 Phaseolus vulgaris
Phvul.005G038800 0.5kb upstream 0.5kb upstream 500 false Chr05: 3786075-3786574 Phaseolus vulgaris
Phvul.005G038800 0.5kb downstream 0.5kb downstream 6214 true Chr05: 3779861-3786074 Phaseolus vulgaris
Phvul.005G038800 0.5kb downstream 0.5kb downstream 500 false Chr05: 3779861-3780360 Phaseolus vulgaris
Phvul.005G038800 1.0kb upstream 1.0kb upstream 6714 true Chr05: 3780361-3787074 Phaseolus vulgaris
Phvul.005G038800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 3786075-3787074 Phaseolus vulgaris
Phvul.005G038800 1.0kb downstream 1.0kb downstream 6714 true Chr05: 3779361-3786074 Phaseolus vulgaris
Phvul.005G038800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 3779361-3780360 Phaseolus vulgaris
Phvul.005G038800 2.0kb upstream 2.0kb upstream 7714 true Chr05: 3780361-3788074 Phaseolus vulgaris
Phvul.005G038800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 3786075-3788074 Phaseolus vulgaris
Phvul.005G038800 2.0kb downstream 2.0kb downstream 7714 true Chr05: 3778361-3786074 Phaseolus vulgaris
Phvul.005G038800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 3778361-3780360 Phaseolus vulgaris
Phvul.005G038800 5.0kb upstream 5.0kb upstream 10714 true Chr05: 3780361-3791074 Phaseolus vulgaris
Phvul.005G038800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 3786075-3791074 Phaseolus vulgaris
Phvul.005G038800 5.0kb downstream 5.0kb downstream 10714 true Chr05: 3775361-3786074 Phaseolus vulgaris
Phvul.005G038800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 3775361-3780360 Phaseolus vulgaris
Phvul.005G038800 10.0kb upstream 10.0kb upstream 15714 true Chr05: 3780361-3796074 Phaseolus vulgaris
Phvul.005G038800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 3786075-3796074 Phaseolus vulgaris
Phvul.005G038800 10.0kb downstream 10.0kb downstream 15714 true Chr05: 3770361-3786074 Phaseolus vulgaris
Phvul.005G038800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 3770361-3780360 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305706 5265 Fabidae View MSA
124066779 5270 Rosid View MSA
123738788 5271 Pentapetalae View MSA
122789248 5272 Eudicot View MSA
122048297 5273 Angiosperm View MSA
121349590 5274 Embryophyte View MSA
123426470 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.613841 0.0 2.15019    
cufflinks 2.01332 0.0 6.16561   High
cufflinks 0.9031 0.0 3.02356    
cufflinks 0.696152 0.0 2.40481    
cufflinks 1.38619 0.0 4.44392    
cufflinks 1.51486 0.0 4.79105    
cufflinks 1.43648 0.0 4.55547    
cufflinks 1.9851 0.0 6.07279   High
cufflinks 1.19297 0.0 3.86535    
cufflinks 0.239661 0.0 0.912834 Low Low
cufflinks 1.19934 0.0 3.90543    

0 Strain