Gene : Phvul.005G036900 P. vulgaris v2.1
Defline:  (1 of 158) PF00010 - Helix-loop-helix DNA-binding domain (HLH) Genomic Order:  366
Name:  ? Phvul.005G036900 Secondary Identifier:  ? PAC:37153156
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G036900 0.5kb upstream 0.5kb upstream 3507 true Chr05: 3568465-3571971 Phaseolus vulgaris
Phvul.005G036900 0.5kb upstream 0.5kb upstream 500 false Chr05: 3568465-3568964 Phaseolus vulgaris
Phvul.005G036900 0.5kb downstream 0.5kb downstream 3507 true Chr05: 3568965-3572471 Phaseolus vulgaris
Phvul.005G036900 0.5kb downstream 0.5kb downstream 500 false Chr05: 3571972-3572471 Phaseolus vulgaris
Phvul.005G036900 1.0kb upstream 1.0kb upstream 4007 true Chr05: 3567965-3571971 Phaseolus vulgaris
Phvul.005G036900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 3567965-3568964 Phaseolus vulgaris
Phvul.005G036900 1.0kb downstream 1.0kb downstream 4007 true Chr05: 3568965-3572971 Phaseolus vulgaris
Phvul.005G036900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 3571972-3572971 Phaseolus vulgaris
Phvul.005G036900 2.0kb upstream 2.0kb upstream 5007 true Chr05: 3566965-3571971 Phaseolus vulgaris
Phvul.005G036900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 3566965-3568964 Phaseolus vulgaris
Phvul.005G036900 2.0kb downstream 2.0kb downstream 5007 true Chr05: 3568965-3573971 Phaseolus vulgaris
Phvul.005G036900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 3571972-3573971 Phaseolus vulgaris
Phvul.005G036900 5.0kb upstream 5.0kb upstream 8007 true Chr05: 3563965-3571971 Phaseolus vulgaris
Phvul.005G036900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 3563965-3568964 Phaseolus vulgaris
Phvul.005G036900 5.0kb downstream 5.0kb downstream 8007 true Chr05: 3568965-3576971 Phaseolus vulgaris
Phvul.005G036900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 3571972-3576971 Phaseolus vulgaris
Phvul.005G036900 10.0kb upstream 10.0kb upstream 13007 true Chr05: 3558965-3571971 Phaseolus vulgaris
Phvul.005G036900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 3558965-3568964 Phaseolus vulgaris
Phvul.005G036900 10.0kb downstream 10.0kb downstream 13007 true Chr05: 3568965-3581971 Phaseolus vulgaris
Phvul.005G036900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 3571972-3581971 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311169 5265 Fabidae View MSA
124073794 5270 Rosid View MSA
123751595 5271 Pentapetalae View MSA
122793357 5272 Eudicot View MSA
122051356 5273 Angiosperm View MSA
121349754 5274 Embryophyte View MSA
123381429 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.2614 0.0 55.1276   High
cufflinks 14.2914 0.0 37.6495    
cufflinks 11.3513 0.0 30.3044    
cufflinks 6.383 0.0 18.0714    
cufflinks 5.81405 0.0 16.6413    
cufflinks 3.27109 0.0 9.87904   Low
cufflinks 5.39515 0.0 15.4226    
cufflinks 4.37381 0.0 12.7075    
cufflinks 21.6935 0.0 56.2008   High
cufflinks 14.3461 0.0 37.8161    
cufflinks 3.77066 0.0 11.2944   Low

0 Strain