Gene : Phvul.005G039900 P. vulgaris v2.1
Defline:  (1 of 1) PTHR37173:SF1 - HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN Genomic Order:  397
Name:  ? Phvul.005G039900 Secondary Identifier:  ? PAC:37152939
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0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G039900 0.5kb upstream 0.5kb upstream 8360 true Chr05: 3959187-3967546 Phaseolus vulgaris
Phvul.005G039900 0.5kb upstream 0.5kb upstream 500 false Chr05: 3959187-3959686 Phaseolus vulgaris
Phvul.005G039900 0.5kb downstream 0.5kb downstream 8360 true Chr05: 3959687-3968046 Phaseolus vulgaris
Phvul.005G039900 0.5kb downstream 0.5kb downstream 500 false Chr05: 3967547-3968046 Phaseolus vulgaris
Phvul.005G039900 1.0kb upstream 1.0kb upstream 8860 true Chr05: 3958687-3967546 Phaseolus vulgaris
Phvul.005G039900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 3958687-3959686 Phaseolus vulgaris
Phvul.005G039900 1.0kb downstream 1.0kb downstream 8860 true Chr05: 3959687-3968546 Phaseolus vulgaris
Phvul.005G039900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 3967547-3968546 Phaseolus vulgaris
Phvul.005G039900 2.0kb upstream 2.0kb upstream 9860 true Chr05: 3957687-3967546 Phaseolus vulgaris
Phvul.005G039900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 3957687-3959686 Phaseolus vulgaris
Phvul.005G039900 2.0kb downstream 2.0kb downstream 9860 true Chr05: 3959687-3969546 Phaseolus vulgaris
Phvul.005G039900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 3967547-3969546 Phaseolus vulgaris
Phvul.005G039900 5.0kb upstream 5.0kb upstream 12860 true Chr05: 3954687-3967546 Phaseolus vulgaris
Phvul.005G039900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 3954687-3959686 Phaseolus vulgaris
Phvul.005G039900 5.0kb downstream 5.0kb downstream 12860 true Chr05: 3959687-3972546 Phaseolus vulgaris
Phvul.005G039900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 3967547-3972546 Phaseolus vulgaris
Phvul.005G039900 10.0kb upstream 10.0kb upstream 17860 true Chr05: 3949687-3967546 Phaseolus vulgaris
Phvul.005G039900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 3949687-3959686 Phaseolus vulgaris
Phvul.005G039900 10.0kb downstream 10.0kb downstream 17860 true Chr05: 3959687-3977546 Phaseolus vulgaris
Phvul.005G039900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 3967547-3977546 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304318 5265 Fabidae View MSA
124065426 5270 Rosid View MSA
123746195 5271 Pentapetalae View MSA
122787235 5272 Eudicot View MSA
122045095 5273 Angiosperm View MSA
121345714 5274 Embryophyte View MSA
123425917 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.52905 0.0 31.2386    
cufflinks 8.69878 0.0 34.7556   High
cufflinks 6.51383 0.0 27.6397   Low
cufflinks 6.11767 0.0 25.9459   Low
cufflinks 8.28405 0.0 33.7084   High
cufflinks 8.33389 0.0 38.29   High
cufflinks 6.32781 0.0 26.7887   Low
cufflinks 7.39594 0.0 30.4613    
cufflinks 7.86616 0.0 31.4238    
cufflinks 6.89756 0.0 29.5716    
cufflinks 7.30739 0.0 29.5344    

0 Strain