Gene : Phvul.005G040900 P. vulgaris v2.1
Defline:  (1 of 2) PTHR12741:SF9 - CALLOSE SYNTHASE 1-RELATED Genomic Order:  407
Name:  ? Phvul.005G040900 Secondary Identifier:  ? PAC:37152358
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6773 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G040900 0.5kb upstream 0.5kb upstream 23278 true Chr05: 4131289-4154566 Phaseolus vulgaris
Phvul.005G040900 0.5kb upstream 0.5kb upstream 500 false Chr05: 4154067-4154566 Phaseolus vulgaris
Phvul.005G040900 0.5kb downstream 0.5kb downstream 23278 true Chr05: 4130789-4154066 Phaseolus vulgaris
Phvul.005G040900 0.5kb downstream 0.5kb downstream 500 false Chr05: 4130789-4131288 Phaseolus vulgaris
Phvul.005G040900 1.0kb upstream 1.0kb upstream 23778 true Chr05: 4131289-4155066 Phaseolus vulgaris
Phvul.005G040900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 4154067-4155066 Phaseolus vulgaris
Phvul.005G040900 1.0kb downstream 1.0kb downstream 23778 true Chr05: 4130289-4154066 Phaseolus vulgaris
Phvul.005G040900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 4130289-4131288 Phaseolus vulgaris
Phvul.005G040900 2.0kb upstream 2.0kb upstream 24778 true Chr05: 4131289-4156066 Phaseolus vulgaris
Phvul.005G040900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 4154067-4156066 Phaseolus vulgaris
Phvul.005G040900 2.0kb downstream 2.0kb downstream 24778 true Chr05: 4129289-4154066 Phaseolus vulgaris
Phvul.005G040900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 4129289-4131288 Phaseolus vulgaris
Phvul.005G040900 5.0kb upstream 5.0kb upstream 27778 true Chr05: 4131289-4159066 Phaseolus vulgaris
Phvul.005G040900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 4154067-4159066 Phaseolus vulgaris
Phvul.005G040900 5.0kb downstream 5.0kb downstream 27778 true Chr05: 4126289-4154066 Phaseolus vulgaris
Phvul.005G040900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 4126289-4131288 Phaseolus vulgaris
Phvul.005G040900 10.0kb upstream 10.0kb upstream 32778 true Chr05: 4131289-4164066 Phaseolus vulgaris
Phvul.005G040900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 4154067-4164066 Phaseolus vulgaris
Phvul.005G040900 10.0kb downstream 10.0kb downstream 32778 true Chr05: 4121289-4154066 Phaseolus vulgaris
Phvul.005G040900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 4121289-4131288 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296508 5265 Fabidae View MSA
124072639 5270 Rosid View MSA
123745171 5271 Pentapetalae View MSA
122788947 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.297 0.0 47.7389    
cufflinks 11.7904 0.0 42.3906    
cufflinks 6.23193 0.0 19.7425    
cufflinks 5.58043 0.0 19.8148   Low
cufflinks 15.1595 0.0 55.3963    
cufflinks 5.88287 0.0 18.5491    
cufflinks 19.1993 0.0 74.8809    
cufflinks 7.10891 0.0 25.1304    
cufflinks 21.038 0.0 82.4123    
cufflinks 65.5697 0.0 371.693 High High
cufflinks 9.04003 0.0 31.7485    

0 Strain