Gene : Phvul.007G168600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR37236:SF1 - AUXIN-BINDING PROTEIN 1 Genomic Order:  1548
Name:  ? Phvul.007G168600 Secondary Identifier:  ? PAC:37166775
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G168600 0.5kb upstream 0.5kb upstream 4953 true Chr07: 28512701-28517653 Phaseolus vulgaris
Phvul.007G168600 0.5kb upstream 0.5kb upstream 500 false Chr07: 28512701-28513200 Phaseolus vulgaris
Phvul.007G168600 0.5kb downstream 0.5kb downstream 4953 true Chr07: 28513201-28518153 Phaseolus vulgaris
Phvul.007G168600 0.5kb downstream 0.5kb downstream 500 false Chr07: 28517654-28518153 Phaseolus vulgaris
Phvul.007G168600 1.0kb upstream 1.0kb upstream 5453 true Chr07: 28512201-28517653 Phaseolus vulgaris
Phvul.007G168600 1.0kb upstream 1.0kb upstream 1000 false Chr07: 28512201-28513200 Phaseolus vulgaris
Phvul.007G168600 1.0kb downstream 1.0kb downstream 5453 true Chr07: 28513201-28518653 Phaseolus vulgaris
Phvul.007G168600 1.0kb downstream 1.0kb downstream 1000 false Chr07: 28517654-28518653 Phaseolus vulgaris
Phvul.007G168600 2.0kb upstream 2.0kb upstream 6453 true Chr07: 28511201-28517653 Phaseolus vulgaris
Phvul.007G168600 2.0kb upstream 2.0kb upstream 2000 false Chr07: 28511201-28513200 Phaseolus vulgaris
Phvul.007G168600 2.0kb downstream 2.0kb downstream 6453 true Chr07: 28513201-28519653 Phaseolus vulgaris
Phvul.007G168600 2.0kb downstream 2.0kb downstream 2000 false Chr07: 28517654-28519653 Phaseolus vulgaris
Phvul.007G168600 5.0kb upstream 5.0kb upstream 9453 true Chr07: 28508201-28517653 Phaseolus vulgaris
Phvul.007G168600 5.0kb upstream 5.0kb upstream 5000 false Chr07: 28508201-28513200 Phaseolus vulgaris
Phvul.007G168600 5.0kb downstream 5.0kb downstream 9453 true Chr07: 28513201-28522653 Phaseolus vulgaris
Phvul.007G168600 5.0kb downstream 5.0kb downstream 5000 false Chr07: 28517654-28522653 Phaseolus vulgaris
Phvul.007G168600 10.0kb upstream 10.0kb upstream 14453 true Chr07: 28503201-28517653 Phaseolus vulgaris
Phvul.007G168600 10.0kb upstream 10.0kb upstream 10000 false Chr07: 28503201-28513200 Phaseolus vulgaris
Phvul.007G168600 10.0kb downstream 10.0kb downstream 14453 true Chr07: 28513201-28527653 Phaseolus vulgaris
Phvul.007G168600 10.0kb downstream 10.0kb downstream 10000 false Chr07: 28517654-28527653 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302147 5265 Fabidae View MSA
124068564 5270 Rosid View MSA
123737576 5271 Pentapetalae View MSA
122787976 5272 Eudicot View MSA
122049427 5273 Angiosperm View MSA
121346924 5274 Embryophyte View MSA
123426893 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.1655 0.0 39.6686    
cufflinks 15.444 0.0 43.1081    
cufflinks 31.2469 0.0 82.1233   High
cufflinks 18.73 0.0 51.5229    
cufflinks 13.5708 0.0 38.547    
cufflinks 20.7019 0.0 56.231    
cufflinks 3.88124 0.0 12.6467   Low
cufflinks 5.39684 0.0 16.8338   Low
cufflinks 4.76953 0.0 15.1599   Low
cufflinks 10.4351 0.0 30.2884    
cufflinks 13.3489 0.0 37.9755    

0 Strain