Gene : Phvul.005G027400 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10799:SF573 - TRANSCRIPTION TERMINATION FACTOR 2 Genomic Order:  272
Name:  ? Phvul.005G027400 Secondary Identifier:  ? PAC:37153297
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G027400 0.5kb upstream 0.5kb upstream 11503 true Chr05: 2544731-2556233 Phaseolus vulgaris
Phvul.005G027400 0.5kb upstream 0.5kb upstream 500 false Chr05: 2555734-2556233 Phaseolus vulgaris
Phvul.005G027400 0.5kb downstream 0.5kb downstream 11503 true Chr05: 2544231-2555733 Phaseolus vulgaris
Phvul.005G027400 0.5kb downstream 0.5kb downstream 500 false Chr05: 2544231-2544730 Phaseolus vulgaris
Phvul.005G027400 1.0kb upstream 1.0kb upstream 12003 true Chr05: 2544731-2556733 Phaseolus vulgaris
Phvul.005G027400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 2555734-2556733 Phaseolus vulgaris
Phvul.005G027400 1.0kb downstream 1.0kb downstream 12003 true Chr05: 2543731-2555733 Phaseolus vulgaris
Phvul.005G027400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 2543731-2544730 Phaseolus vulgaris
Phvul.005G027400 2.0kb upstream 2.0kb upstream 13003 true Chr05: 2544731-2557733 Phaseolus vulgaris
Phvul.005G027400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 2555734-2557733 Phaseolus vulgaris
Phvul.005G027400 2.0kb downstream 2.0kb downstream 13003 true Chr05: 2542731-2555733 Phaseolus vulgaris
Phvul.005G027400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 2542731-2544730 Phaseolus vulgaris
Phvul.005G027400 5.0kb upstream 5.0kb upstream 16003 true Chr05: 2544731-2560733 Phaseolus vulgaris
Phvul.005G027400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 2555734-2560733 Phaseolus vulgaris
Phvul.005G027400 5.0kb downstream 5.0kb downstream 16003 true Chr05: 2539731-2555733 Phaseolus vulgaris
Phvul.005G027400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 2539731-2544730 Phaseolus vulgaris
Phvul.005G027400 10.0kb upstream 10.0kb upstream 21003 true Chr05: 2544731-2565733 Phaseolus vulgaris
Phvul.005G027400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 2555734-2565733 Phaseolus vulgaris
Phvul.005G027400 10.0kb downstream 10.0kb downstream 21003 true Chr05: 2534731-2555733 Phaseolus vulgaris
Phvul.005G027400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 2534731-2544730 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300627 5265 Fabidae View MSA
124067561 5270 Rosid View MSA
123738895 5271 Pentapetalae View MSA
122788096 5272 Eudicot View MSA
122041978 5273 Angiosperm View MSA
121346055 5274 Embryophyte View MSA
123424068 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.90257 0.0 5.46796   Low
cufflinks 5.52101 0.0 14.5145    
cufflinks 5.32168 0.0 13.9995    
cufflinks 2.27664 0.0 6.46485   Low
cufflinks 3.4867 0.0 9.51787    
cufflinks 6.94306 0.0 18.0575   High
cufflinks 4.28397 0.0 11.455    
cufflinks 6.73535 0.0 17.511   High
cufflinks 3.769 0.0 10.2025    
cufflinks 6.25497 0.0 16.3334    
cufflinks 2.76976 0.0 7.70607    

0 Strain