Gene : Phvul.007G171700 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1576
Name:  ? Phvul.007G171700 Secondary Identifier:  ? PAC:37165056
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G171700 0.5kb upstream 0.5kb upstream 3218 true Chr07: 28781684-28784901 Phaseolus vulgaris
Phvul.007G171700 0.5kb upstream 0.5kb upstream 500 false Chr07: 28784402-28784901 Phaseolus vulgaris
Phvul.007G171700 0.5kb downstream 0.5kb downstream 3218 true Chr07: 28781184-28784401 Phaseolus vulgaris
Phvul.007G171700 0.5kb downstream 0.5kb downstream 500 false Chr07: 28781184-28781683 Phaseolus vulgaris
Phvul.007G171700 1.0kb upstream 1.0kb upstream 3718 true Chr07: 28781684-28785401 Phaseolus vulgaris
Phvul.007G171700 1.0kb upstream 1.0kb upstream 1000 false Chr07: 28784402-28785401 Phaseolus vulgaris
Phvul.007G171700 1.0kb downstream 1.0kb downstream 3718 true Chr07: 28780684-28784401 Phaseolus vulgaris
Phvul.007G171700 1.0kb downstream 1.0kb downstream 1000 false Chr07: 28780684-28781683 Phaseolus vulgaris
Phvul.007G171700 2.0kb upstream 2.0kb upstream 4718 true Chr07: 28781684-28786401 Phaseolus vulgaris
Phvul.007G171700 2.0kb upstream 2.0kb upstream 2000 false Chr07: 28784402-28786401 Phaseolus vulgaris
Phvul.007G171700 2.0kb downstream 2.0kb downstream 4718 true Chr07: 28779684-28784401 Phaseolus vulgaris
Phvul.007G171700 2.0kb downstream 2.0kb downstream 2000 false Chr07: 28779684-28781683 Phaseolus vulgaris
Phvul.007G171700 5.0kb upstream 5.0kb upstream 7718 true Chr07: 28781684-28789401 Phaseolus vulgaris
Phvul.007G171700 5.0kb upstream 5.0kb upstream 5000 false Chr07: 28784402-28789401 Phaseolus vulgaris
Phvul.007G171700 5.0kb downstream 5.0kb downstream 7718 true Chr07: 28776684-28784401 Phaseolus vulgaris
Phvul.007G171700 5.0kb downstream 5.0kb downstream 5000 false Chr07: 28776684-28781683 Phaseolus vulgaris
Phvul.007G171700 10.0kb upstream 10.0kb upstream 12718 true Chr07: 28781684-28794401 Phaseolus vulgaris
Phvul.007G171700 10.0kb upstream 10.0kb upstream 10000 false Chr07: 28784402-28794401 Phaseolus vulgaris
Phvul.007G171700 10.0kb downstream 10.0kb downstream 12718 true Chr07: 28771684-28784401 Phaseolus vulgaris
Phvul.007G171700 10.0kb downstream 10.0kb downstream 10000 false Chr07: 28771684-28781683 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302790 5265 Fabidae View MSA
124062477 5270 Rosid View MSA
123739540 5271 Pentapetalae View MSA
122790225 5272 Eudicot View MSA
122049132 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.28648 0.0 4.22522    
cufflinks 2.13735 0.0 6.63722   High
cufflinks 1.58217 0.0 5.06258    
cufflinks 1.40564 0.0 4.62538    
cufflinks 0.892505 0.0 3.0838    
cufflinks 1.05623 0.0 3.54917    
cufflinks 0.675755 0.0 2.38226   Low
cufflinks 1.83691 0.0 5.75575   High
cufflinks 1.13599 0.0 3.79835    
cufflinks 1.13975 0.0 3.80439    
cufflinks 1.05509 0.0 3.56514    

0 Strain