Gene : Phvul.005G028600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR28626:SF3 - SRR1-LIKE PROTEIN Genomic Order:  279
Name:  ? Phvul.005G028600 Secondary Identifier:  ? PAC:37153096
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G028600 0.5kb upstream 0.5kb upstream 4024 true Chr05: 2626457-2630480 Phaseolus vulgaris
Phvul.005G028600 0.5kb upstream 0.5kb upstream 500 false Chr05: 2626457-2626956 Phaseolus vulgaris
Phvul.005G028600 0.5kb downstream 0.5kb downstream 4024 true Chr05: 2626957-2630980 Phaseolus vulgaris
Phvul.005G028600 0.5kb downstream 0.5kb downstream 500 false Chr05: 2630481-2630980 Phaseolus vulgaris
Phvul.005G028600 1.0kb upstream 1.0kb upstream 4524 true Chr05: 2625957-2630480 Phaseolus vulgaris
Phvul.005G028600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 2625957-2626956 Phaseolus vulgaris
Phvul.005G028600 1.0kb downstream 1.0kb downstream 4524 true Chr05: 2626957-2631480 Phaseolus vulgaris
Phvul.005G028600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 2630481-2631480 Phaseolus vulgaris
Phvul.005G028600 2.0kb upstream 2.0kb upstream 5524 true Chr05: 2624957-2630480 Phaseolus vulgaris
Phvul.005G028600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 2624957-2626956 Phaseolus vulgaris
Phvul.005G028600 2.0kb downstream 2.0kb downstream 5524 true Chr05: 2626957-2632480 Phaseolus vulgaris
Phvul.005G028600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 2630481-2632480 Phaseolus vulgaris
Phvul.005G028600 5.0kb upstream 5.0kb upstream 8524 true Chr05: 2621957-2630480 Phaseolus vulgaris
Phvul.005G028600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 2621957-2626956 Phaseolus vulgaris
Phvul.005G028600 5.0kb downstream 5.0kb downstream 8524 true Chr05: 2626957-2635480 Phaseolus vulgaris
Phvul.005G028600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 2630481-2635480 Phaseolus vulgaris
Phvul.005G028600 10.0kb upstream 10.0kb upstream 13524 true Chr05: 2616957-2630480 Phaseolus vulgaris
Phvul.005G028600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 2616957-2626956 Phaseolus vulgaris
Phvul.005G028600 10.0kb downstream 10.0kb downstream 13524 true Chr05: 2626957-2640480 Phaseolus vulgaris
Phvul.005G028600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 2630481-2640480 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307324 5265 Fabidae View MSA
124062185 5270 Rosid View MSA
123738152 5271 Pentapetalae View MSA
122785671 5272 Eudicot View MSA
122046213 5273 Angiosperm View MSA
121347995 5274 Embryophyte View MSA
123428800 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.815 0.0 20.229   High
cufflinks 4.55781 0.0 14.2122    
cufflinks 3.17997 0.0 10.324   Low
cufflinks 5.17906 0.0 16.0292    
cufflinks 4.41477 0.0 13.9135    
cufflinks 3.0296 0.0 9.90076   Low
cufflinks 3.71691 0.0 11.8558    
cufflinks 2.97995 0.0 9.69576   Low
cufflinks 3.86543 0.0 12.3016    
cufflinks 7.1942 0.0 21.2535   High
cufflinks 4.88171 0.0 15.1692    

0 Strain