Gene : Phvul.005G029100 P. vulgaris v2.1
Defline:  (1 of 2) PTHR21330:SF2 - E3 SUMO-PROTEIN LIGASE MMS21 Genomic Order:  284
Name:  ? Phvul.005G029100 Secondary Identifier:  ? PAC:37152387
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G029100 0.5kb upstream 0.5kb upstream 5165 true Chr05: 2677903-2683067 Phaseolus vulgaris
Phvul.005G029100 0.5kb upstream 0.5kb upstream 500 false Chr05: 2677903-2678402 Phaseolus vulgaris
Phvul.005G029100 0.5kb downstream 0.5kb downstream 5165 true Chr05: 2678403-2683567 Phaseolus vulgaris
Phvul.005G029100 0.5kb downstream 0.5kb downstream 500 false Chr05: 2683068-2683567 Phaseolus vulgaris
Phvul.005G029100 1.0kb upstream 1.0kb upstream 5665 true Chr05: 2677403-2683067 Phaseolus vulgaris
Phvul.005G029100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 2677403-2678402 Phaseolus vulgaris
Phvul.005G029100 1.0kb downstream 1.0kb downstream 5665 true Chr05: 2678403-2684067 Phaseolus vulgaris
Phvul.005G029100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 2683068-2684067 Phaseolus vulgaris
Phvul.005G029100 2.0kb upstream 2.0kb upstream 6665 true Chr05: 2676403-2683067 Phaseolus vulgaris
Phvul.005G029100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 2676403-2678402 Phaseolus vulgaris
Phvul.005G029100 2.0kb downstream 2.0kb downstream 6665 true Chr05: 2678403-2685067 Phaseolus vulgaris
Phvul.005G029100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 2683068-2685067 Phaseolus vulgaris
Phvul.005G029100 5.0kb upstream 5.0kb upstream 9665 true Chr05: 2673403-2683067 Phaseolus vulgaris
Phvul.005G029100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 2673403-2678402 Phaseolus vulgaris
Phvul.005G029100 5.0kb downstream 5.0kb downstream 9665 true Chr05: 2678403-2688067 Phaseolus vulgaris
Phvul.005G029100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 2683068-2688067 Phaseolus vulgaris
Phvul.005G029100 10.0kb upstream 10.0kb upstream 14665 true Chr05: 2668403-2683067 Phaseolus vulgaris
Phvul.005G029100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 2668403-2678402 Phaseolus vulgaris
Phvul.005G029100 10.0kb downstream 10.0kb downstream 14665 true Chr05: 2678403-2693067 Phaseolus vulgaris
Phvul.005G029100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 2683068-2693067 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312073 5265 Fabidae View MSA
124064105 5270 Rosid View MSA
123740450 5271 Pentapetalae View MSA
122790710 5272 Eudicot View MSA
122044966 5273 Angiosperm View MSA
121344157 5274 Embryophyte View MSA
123424394 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.77417 0.0 17.2735   High
cufflinks 6.12507 0.0 18.2237   High
cufflinks 2.49009 0.0 8.19678   Low
cufflinks 5.77945 0.0 17.3614   High
cufflinks 4.14732 0.0 13.0102    
cufflinks 2.45025 0.0 8.08717   Low
cufflinks 3.56932 0.0 11.3045    
cufflinks 4.26759 0.0 13.2015    
cufflinks 3.53978 0.0 11.2291    
cufflinks 2.8912 0.0 9.37517    
cufflinks 5.07201 0.0 15.4939    

0 Strain