Gene : Phvul.005G029400 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10315//PTHR10315:SF29 - SEVEN IN ABSENTIA HOMOLOG // SUBFAMILY NOT NAMED Genomic Order:  287
Name:  ? Phvul.005G029400 Secondary Identifier:  ? PAC:37154352
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7511 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G029400 0.5kb upstream 0.5kb upstream 4661 true Chr05: 2713858-2718518 Phaseolus vulgaris
Phvul.005G029400 0.5kb upstream 0.5kb upstream 500 false Chr05: 2718019-2718518 Phaseolus vulgaris
Phvul.005G029400 0.5kb downstream 0.5kb downstream 4661 true Chr05: 2713358-2718018 Phaseolus vulgaris
Phvul.005G029400 0.5kb downstream 0.5kb downstream 500 false Chr05: 2713358-2713857 Phaseolus vulgaris
Phvul.005G029400 1.0kb upstream 1.0kb upstream 5161 true Chr05: 2713858-2719018 Phaseolus vulgaris
Phvul.005G029400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 2718019-2719018 Phaseolus vulgaris
Phvul.005G029400 1.0kb downstream 1.0kb downstream 5161 true Chr05: 2712858-2718018 Phaseolus vulgaris
Phvul.005G029400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 2712858-2713857 Phaseolus vulgaris
Phvul.005G029400 2.0kb upstream 2.0kb upstream 6161 true Chr05: 2713858-2720018 Phaseolus vulgaris
Phvul.005G029400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 2718019-2720018 Phaseolus vulgaris
Phvul.005G029400 2.0kb downstream 2.0kb downstream 6161 true Chr05: 2711858-2718018 Phaseolus vulgaris
Phvul.005G029400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 2711858-2713857 Phaseolus vulgaris
Phvul.005G029400 5.0kb upstream 5.0kb upstream 9161 true Chr05: 2713858-2723018 Phaseolus vulgaris
Phvul.005G029400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 2718019-2723018 Phaseolus vulgaris
Phvul.005G029400 5.0kb downstream 5.0kb downstream 9161 true Chr05: 2708858-2718018 Phaseolus vulgaris
Phvul.005G029400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 2708858-2713857 Phaseolus vulgaris
Phvul.005G029400 10.0kb upstream 10.0kb upstream 14161 true Chr05: 2713858-2728018 Phaseolus vulgaris
Phvul.005G029400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 2718019-2728018 Phaseolus vulgaris
Phvul.005G029400 10.0kb downstream 10.0kb downstream 14161 true Chr05: 2703858-2718018 Phaseolus vulgaris
Phvul.005G029400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 2703858-2713857 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306983 5265 Fabidae View MSA
124069632 5270 Rosid View MSA
123750736 5271 Pentapetalae View MSA
122797657 5272 Eudicot View MSA
122049350 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.99196 0.0 30.7083    
cufflinks 6.93665 0.0 23.8129    
cufflinks 7.1251 0.0 24.0765    
cufflinks 10.469 0.0 38.2788   High
cufflinks 6.36164 0.0 26.4217    
cufflinks 8.94649 0.0 37.2193    
cufflinks 6.713 0.0 26.6532    
cufflinks 7.16923 0.0 28.9692    
cufflinks 5.80198 0.0 20.6908    
cufflinks 4.29182 0.0 17.0555   Low
cufflinks 9.42813 0.0 35.2928   High

0 Strain