Gene : Phvul.005G033300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10774:SF61 - ELONGATION DEFECTIVE 1 Genomic Order:  327
Name:  ? Phvul.005G033300 Secondary Identifier:  ? PAC:37152323
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G033300 0.5kb upstream 0.5kb upstream 6287 true Chr05: 3053399-3059685 Phaseolus vulgaris
Phvul.005G033300 0.5kb upstream 0.5kb upstream 500 false Chr05: 3053399-3053898 Phaseolus vulgaris
Phvul.005G033300 0.5kb downstream 0.5kb downstream 6287 true Chr05: 3053899-3060185 Phaseolus vulgaris
Phvul.005G033300 0.5kb downstream 0.5kb downstream 500 false Chr05: 3059686-3060185 Phaseolus vulgaris
Phvul.005G033300 1.0kb upstream 1.0kb upstream 6787 true Chr05: 3052899-3059685 Phaseolus vulgaris
Phvul.005G033300 1.0kb upstream 1.0kb upstream 1000 false Chr05: 3052899-3053898 Phaseolus vulgaris
Phvul.005G033300 1.0kb downstream 1.0kb downstream 6787 true Chr05: 3053899-3060685 Phaseolus vulgaris
Phvul.005G033300 1.0kb downstream 1.0kb downstream 1000 false Chr05: 3059686-3060685 Phaseolus vulgaris
Phvul.005G033300 2.0kb upstream 2.0kb upstream 7787 true Chr05: 3051899-3059685 Phaseolus vulgaris
Phvul.005G033300 2.0kb upstream 2.0kb upstream 2000 false Chr05: 3051899-3053898 Phaseolus vulgaris
Phvul.005G033300 2.0kb downstream 2.0kb downstream 7787 true Chr05: 3053899-3061685 Phaseolus vulgaris
Phvul.005G033300 2.0kb downstream 2.0kb downstream 2000 false Chr05: 3059686-3061685 Phaseolus vulgaris
Phvul.005G033300 5.0kb upstream 5.0kb upstream 10787 true Chr05: 3048899-3059685 Phaseolus vulgaris
Phvul.005G033300 5.0kb upstream 5.0kb upstream 5000 false Chr05: 3048899-3053898 Phaseolus vulgaris
Phvul.005G033300 5.0kb downstream 5.0kb downstream 10787 true Chr05: 3053899-3064685 Phaseolus vulgaris
Phvul.005G033300 5.0kb downstream 5.0kb downstream 5000 false Chr05: 3059686-3064685 Phaseolus vulgaris
Phvul.005G033300 10.0kb upstream 10.0kb upstream 15787 true Chr05: 3043899-3059685 Phaseolus vulgaris
Phvul.005G033300 10.0kb upstream 10.0kb upstream 10000 false Chr05: 3043899-3053898 Phaseolus vulgaris
Phvul.005G033300 10.0kb downstream 10.0kb downstream 15787 true Chr05: 3053899-3069685 Phaseolus vulgaris
Phvul.005G033300 10.0kb downstream 10.0kb downstream 10000 false Chr05: 3059686-3069685 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302075 5265 Fabidae View MSA
124074098 5270 Rosid View MSA
123747804 5271 Pentapetalae View MSA
122791335 5272 Eudicot View MSA
122042334 5273 Angiosperm View MSA
121345597 5274 Embryophyte View MSA
123428781 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.43845 0.0 22.9942   Low
cufflinks 21.1077 0.0 54.6682    
cufflinks 27.266 0.0 70.501    
cufflinks 23.8891 0.0 61.7711    
cufflinks 29.8752 0.0 77.2814    
cufflinks 28.2092 0.0 72.9392    
cufflinks 19.8153 0.0 51.402    
cufflinks 12.4209 0.0 32.8889   Low
cufflinks 25.4842 0.0 65.8819    
cufflinks 20.2188 0.0 52.4033    
cufflinks 37.8055 0.0 98.2259 High High

0 Strain