Gene : Phvul.005G016400 P. vulgaris v2.1
Defline:  (1 of 2) PTHR23024//PTHR23024:SF135 - MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES // SUBFAMILY NOT NAMED Genomic Order:  159
Name:  ? Phvul.005G016400 Secondary Identifier:  ? PAC:37154261
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6303 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G016400 0.5kb upstream 0.5kb upstream 1858 true Chr05: 1440319-1442176 Phaseolus vulgaris
Phvul.005G016400 0.5kb upstream 0.5kb upstream 500 false Chr05: 1440319-1440818 Phaseolus vulgaris
Phvul.005G016400 0.5kb downstream 0.5kb downstream 1858 true Chr05: 1440819-1442676 Phaseolus vulgaris
Phvul.005G016400 0.5kb downstream 0.5kb downstream 500 false Chr05: 1442177-1442676 Phaseolus vulgaris
Phvul.005G016400 1.0kb upstream 1.0kb upstream 2358 true Chr05: 1439819-1442176 Phaseolus vulgaris
Phvul.005G016400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 1439819-1440818 Phaseolus vulgaris
Phvul.005G016400 1.0kb downstream 1.0kb downstream 2358 true Chr05: 1440819-1443176 Phaseolus vulgaris
Phvul.005G016400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 1442177-1443176 Phaseolus vulgaris
Phvul.005G016400 2.0kb upstream 2.0kb upstream 3358 true Chr05: 1438819-1442176 Phaseolus vulgaris
Phvul.005G016400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 1438819-1440818 Phaseolus vulgaris
Phvul.005G016400 2.0kb downstream 2.0kb downstream 3358 true Chr05: 1440819-1444176 Phaseolus vulgaris
Phvul.005G016400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 1442177-1444176 Phaseolus vulgaris
Phvul.005G016400 5.0kb upstream 5.0kb upstream 6358 true Chr05: 1435819-1442176 Phaseolus vulgaris
Phvul.005G016400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 1435819-1440818 Phaseolus vulgaris
Phvul.005G016400 5.0kb downstream 5.0kb downstream 6358 true Chr05: 1440819-1447176 Phaseolus vulgaris
Phvul.005G016400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 1442177-1447176 Phaseolus vulgaris
Phvul.005G016400 10.0kb upstream 10.0kb upstream 11358 true Chr05: 1430819-1442176 Phaseolus vulgaris
Phvul.005G016400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 1430819-1440818 Phaseolus vulgaris
Phvul.005G016400 10.0kb downstream 10.0kb downstream 11358 true Chr05: 1440819-1452176 Phaseolus vulgaris
Phvul.005G016400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 1442177-1452176 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309200 5265 Fabidae View MSA
124069662 5270 Rosid View MSA
123742376 5271 Pentapetalae View MSA
122794842 5272 Eudicot View MSA
122048424 5273 Angiosperm View MSA
123428915 5275 Viridiplantae View MSA
121350136 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.3464 0.0 37.8419    
cufflinks 6.91455 0.0 19.454    
cufflinks 16.3921 0.0 43.1762    
cufflinks 7.7202 0.0 21.4303    
cufflinks 234.427 0.0 738.817 High High
cufflinks 11.2903 0.0 30.4407    
cufflinks 22.8533 0.0 59.151    
cufflinks 7.8531 0.0 21.8104    
cufflinks 28.0183 0.0 72.422    
cufflinks 1.8823 0.0 6.08979   Low
cufflinks 151.323 0.0 443.493 High High

0 Strain