Gene : Phvul.007G158700 P. vulgaris v2.1
Defline:  (1 of 19) PF16135 - TPL-binding domain in jasmonate signalling (Jas) Genomic Order:  1449
Name:  ? Phvul.007G158700 Secondary Identifier:  ? PAC:37164648
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G158700 0.5kb upstream 0.5kb upstream 4512 true Chr07: 26845577-26850088 Phaseolus vulgaris
Phvul.007G158700 0.5kb upstream 0.5kb upstream 500 false Chr07: 26849589-26850088 Phaseolus vulgaris
Phvul.007G158700 0.5kb downstream 0.5kb downstream 4512 true Chr07: 26845077-26849588 Phaseolus vulgaris
Phvul.007G158700 0.5kb downstream 0.5kb downstream 500 false Chr07: 26845077-26845576 Phaseolus vulgaris
Phvul.007G158700 1.0kb upstream 1.0kb upstream 5012 true Chr07: 26845577-26850588 Phaseolus vulgaris
Phvul.007G158700 1.0kb upstream 1.0kb upstream 1000 false Chr07: 26849589-26850588 Phaseolus vulgaris
Phvul.007G158700 1.0kb downstream 1.0kb downstream 5012 true Chr07: 26844577-26849588 Phaseolus vulgaris
Phvul.007G158700 1.0kb downstream 1.0kb downstream 1000 false Chr07: 26844577-26845576 Phaseolus vulgaris
Phvul.007G158700 2.0kb upstream 2.0kb upstream 6012 true Chr07: 26845577-26851588 Phaseolus vulgaris
Phvul.007G158700 2.0kb upstream 2.0kb upstream 2000 false Chr07: 26849589-26851588 Phaseolus vulgaris
Phvul.007G158700 2.0kb downstream 2.0kb downstream 6012 true Chr07: 26843577-26849588 Phaseolus vulgaris
Phvul.007G158700 2.0kb downstream 2.0kb downstream 2000 false Chr07: 26843577-26845576 Phaseolus vulgaris
Phvul.007G158700 5.0kb upstream 5.0kb upstream 9012 true Chr07: 26845577-26854588 Phaseolus vulgaris
Phvul.007G158700 5.0kb upstream 5.0kb upstream 5000 false Chr07: 26849589-26854588 Phaseolus vulgaris
Phvul.007G158700 5.0kb downstream 5.0kb downstream 9012 true Chr07: 26840577-26849588 Phaseolus vulgaris
Phvul.007G158700 5.0kb downstream 5.0kb downstream 5000 false Chr07: 26840577-26845576 Phaseolus vulgaris
Phvul.007G158700 10.0kb upstream 10.0kb upstream 14012 true Chr07: 26845577-26859588 Phaseolus vulgaris
Phvul.007G158700 10.0kb upstream 10.0kb upstream 10000 false Chr07: 26849589-26859588 Phaseolus vulgaris
Phvul.007G158700 10.0kb downstream 10.0kb downstream 14012 true Chr07: 26835577-26849588 Phaseolus vulgaris
Phvul.007G158700 10.0kb downstream 10.0kb downstream 10000 false Chr07: 26835577-26845576 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307898 5265 Fabidae View MSA
124072132 5270 Rosid View MSA
123747463 5271 Pentapetalae View MSA
122794643 5272 Eudicot View MSA
122051104 5273 Angiosperm View MSA
121312296 5274 Embryophyte View MSA
123349483 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.53132 0.0 56.3613   Low
cufflinks 2.55313 0.0 17.1523    
cufflinks 4.86499 0.0 21.5027   High
cufflinks 2.09912 0.0 40.0316    
cufflinks 2.60371 0.0 51.2933    
cufflinks 2.91931 0.0 17.8176    
cufflinks 2.66499 0.0 33.0657    
cufflinks 4.05959 0.0 49.1396   High
cufflinks 2.96539 0.0 35.8462    
cufflinks 2.98891 0.0 18.4309    
cufflinks 1.70104 0.0 17.2092   Low

0 Strain