Gene : Phvul.007G163300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11254:SF350 - E3 UBIQUITIN-PROTEIN LIGASE UPL4 Genomic Order:  1490
Name:  ? Phvul.007G163300 Secondary Identifier:  ? PAC:37166912
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7511 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G163300 0.5kb upstream 0.5kb upstream 9151 true Chr07: 27595641-27604791 Phaseolus vulgaris
Phvul.007G163300 0.5kb upstream 0.5kb upstream 500 false Chr07: 27595641-27596140 Phaseolus vulgaris
Phvul.007G163300 0.5kb downstream 0.5kb downstream 9151 true Chr07: 27596141-27605291 Phaseolus vulgaris
Phvul.007G163300 0.5kb downstream 0.5kb downstream 500 false Chr07: 27604792-27605291 Phaseolus vulgaris
Phvul.007G163300 1.0kb upstream 1.0kb upstream 9651 true Chr07: 27595141-27604791 Phaseolus vulgaris
Phvul.007G163300 1.0kb upstream 1.0kb upstream 1000 false Chr07: 27595141-27596140 Phaseolus vulgaris
Phvul.007G163300 1.0kb downstream 1.0kb downstream 9651 true Chr07: 27596141-27605791 Phaseolus vulgaris
Phvul.007G163300 1.0kb downstream 1.0kb downstream 1000 false Chr07: 27604792-27605791 Phaseolus vulgaris
Phvul.007G163300 2.0kb upstream 2.0kb upstream 10651 true Chr07: 27594141-27604791 Phaseolus vulgaris
Phvul.007G163300 2.0kb upstream 2.0kb upstream 2000 false Chr07: 27594141-27596140 Phaseolus vulgaris
Phvul.007G163300 2.0kb downstream 2.0kb downstream 10651 true Chr07: 27596141-27606791 Phaseolus vulgaris
Phvul.007G163300 2.0kb downstream 2.0kb downstream 2000 false Chr07: 27604792-27606791 Phaseolus vulgaris
Phvul.007G163300 5.0kb upstream 5.0kb upstream 13651 true Chr07: 27591141-27604791 Phaseolus vulgaris
Phvul.007G163300 5.0kb upstream 5.0kb upstream 5000 false Chr07: 27591141-27596140 Phaseolus vulgaris
Phvul.007G163300 5.0kb downstream 5.0kb downstream 13651 true Chr07: 27596141-27609791 Phaseolus vulgaris
Phvul.007G163300 5.0kb downstream 5.0kb downstream 5000 false Chr07: 27604792-27609791 Phaseolus vulgaris
Phvul.007G163300 10.0kb upstream 10.0kb upstream 18651 true Chr07: 27586141-27604791 Phaseolus vulgaris
Phvul.007G163300 10.0kb upstream 10.0kb upstream 10000 false Chr07: 27586141-27596140 Phaseolus vulgaris
Phvul.007G163300 10.0kb downstream 10.0kb downstream 18651 true Chr07: 27596141-27614791 Phaseolus vulgaris
Phvul.007G163300 10.0kb downstream 10.0kb downstream 10000 false Chr07: 27604792-27614791 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301785 5265 Fabidae View MSA
124066546 5270 Rosid View MSA
123736938 5271 Pentapetalae View MSA
122796953 5272 Eudicot View MSA
122044351 5273 Angiosperm View MSA
121310283 5274 Embryophyte View MSA
123428406 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.53306 0.0 10.8508    
cufflinks 4.21535 0.0 12.6274    
cufflinks 5.10348 0.0 14.7934    
cufflinks 2.13355 0.0 7.25093   Low
cufflinks 7.72433 0.0 26.4949    
cufflinks 5.16128 0.0 17.7437    
cufflinks 14.1833 0.0 47.7026   High
cufflinks 9.65609 0.0 32.7114    
cufflinks 12.4519 0.0 34.8469    
cufflinks 19.374 0.0 56.5811   High
cufflinks 4.50991 0.0 13.5092    

0 Strain