Gene : Phvul.005G023200 P. vulgaris v2.1
Defline:  (1 of 3) PF03350 - Uncharacterized protein family, UPF0114 (UPF0114) Genomic Order:  229
Name:  ? Phvul.005G023200 Secondary Identifier:  ? PAC:37153404
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G023200 0.5kb upstream 0.5kb upstream 4320 true Chr05: 2079609-2083928 Phaseolus vulgaris
Phvul.005G023200 0.5kb upstream 0.5kb upstream 500 false Chr05: 2083429-2083928 Phaseolus vulgaris
Phvul.005G023200 0.5kb downstream 0.5kb downstream 4320 true Chr05: 2079109-2083428 Phaseolus vulgaris
Phvul.005G023200 0.5kb downstream 0.5kb downstream 500 false Chr05: 2079109-2079608 Phaseolus vulgaris
Phvul.005G023200 1.0kb upstream 1.0kb upstream 4820 true Chr05: 2079609-2084428 Phaseolus vulgaris
Phvul.005G023200 1.0kb upstream 1.0kb upstream 1000 false Chr05: 2083429-2084428 Phaseolus vulgaris
Phvul.005G023200 1.0kb downstream 1.0kb downstream 4820 true Chr05: 2078609-2083428 Phaseolus vulgaris
Phvul.005G023200 1.0kb downstream 1.0kb downstream 1000 false Chr05: 2078609-2079608 Phaseolus vulgaris
Phvul.005G023200 2.0kb upstream 2.0kb upstream 5820 true Chr05: 2079609-2085428 Phaseolus vulgaris
Phvul.005G023200 2.0kb upstream 2.0kb upstream 2000 false Chr05: 2083429-2085428 Phaseolus vulgaris
Phvul.005G023200 2.0kb downstream 2.0kb downstream 5820 true Chr05: 2077609-2083428 Phaseolus vulgaris
Phvul.005G023200 2.0kb downstream 2.0kb downstream 2000 false Chr05: 2077609-2079608 Phaseolus vulgaris
Phvul.005G023200 5.0kb upstream 5.0kb upstream 8820 true Chr05: 2079609-2088428 Phaseolus vulgaris
Phvul.005G023200 5.0kb upstream 5.0kb upstream 5000 false Chr05: 2083429-2088428 Phaseolus vulgaris
Phvul.005G023200 5.0kb downstream 5.0kb downstream 8820 true Chr05: 2074609-2083428 Phaseolus vulgaris
Phvul.005G023200 5.0kb downstream 5.0kb downstream 5000 false Chr05: 2074609-2079608 Phaseolus vulgaris
Phvul.005G023200 10.0kb upstream 10.0kb upstream 13820 true Chr05: 2079609-2093428 Phaseolus vulgaris
Phvul.005G023200 10.0kb upstream 10.0kb upstream 10000 false Chr05: 2083429-2093428 Phaseolus vulgaris
Phvul.005G023200 10.0kb downstream 10.0kb downstream 13820 true Chr05: 2069609-2083428 Phaseolus vulgaris
Phvul.005G023200 10.0kb downstream 10.0kb downstream 10000 false Chr05: 2069609-2079608 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301585 5265 Fabidae View MSA
124062348 5270 Rosid View MSA
123737999 5271 Pentapetalae View MSA
122786601 5272 Eudicot View MSA
122048009 5273 Angiosperm View MSA
121348495 5274 Embryophyte View MSA
123426050 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 267.3 0.0 749.064 High High
cufflinks 106.043 0.0 275.462 High  
cufflinks 151.673 0.0 401.858 High  
cufflinks 78.8933 0.0 203.969 High  
cufflinks 120.616 0.0 316.102 High  
cufflinks 77.579 0.0 200.53 High  
cufflinks 18.1286 0.0 50.9872   Low
cufflinks 19.4407 0.0 54.3492   Low
cufflinks 14.1439 0.0 40.9932   Low
cufflinks 132.127 0.0 346.482 High  
cufflinks 86.5749 0.0 223.929 High  

0 Strain