Gene : Phvul.005G022100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR13301//PTHR13301:SF61 - X-BOX TRANSCRIPTION FACTOR-RELATED // SUBFAMILY NOT NAMED Genomic Order:  218
Name:  ? Phvul.005G022100 Secondary Identifier:  ? PAC:37153032
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1001 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G022100 0.5kb upstream 0.5kb upstream 8403 true Chr05: 1987004-1995406 Phaseolus vulgaris
Phvul.005G022100 0.5kb upstream 0.5kb upstream 500 false Chr05: 1994907-1995406 Phaseolus vulgaris
Phvul.005G022100 0.5kb downstream 0.5kb downstream 8403 true Chr05: 1986504-1994906 Phaseolus vulgaris
Phvul.005G022100 0.5kb downstream 0.5kb downstream 500 false Chr05: 1986504-1987003 Phaseolus vulgaris
Phvul.005G022100 1.0kb upstream 1.0kb upstream 8903 true Chr05: 1987004-1995906 Phaseolus vulgaris
Phvul.005G022100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 1994907-1995906 Phaseolus vulgaris
Phvul.005G022100 1.0kb downstream 1.0kb downstream 8903 true Chr05: 1986004-1994906 Phaseolus vulgaris
Phvul.005G022100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 1986004-1987003 Phaseolus vulgaris
Phvul.005G022100 2.0kb upstream 2.0kb upstream 9903 true Chr05: 1987004-1996906 Phaseolus vulgaris
Phvul.005G022100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 1994907-1996906 Phaseolus vulgaris
Phvul.005G022100 2.0kb downstream 2.0kb downstream 9903 true Chr05: 1985004-1994906 Phaseolus vulgaris
Phvul.005G022100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 1985004-1987003 Phaseolus vulgaris
Phvul.005G022100 5.0kb upstream 5.0kb upstream 12903 true Chr05: 1987004-1999906 Phaseolus vulgaris
Phvul.005G022100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 1994907-1999906 Phaseolus vulgaris
Phvul.005G022100 5.0kb downstream 5.0kb downstream 12903 true Chr05: 1982004-1994906 Phaseolus vulgaris
Phvul.005G022100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 1982004-1987003 Phaseolus vulgaris
Phvul.005G022100 10.0kb upstream 10.0kb upstream 17903 true Chr05: 1987004-2004906 Phaseolus vulgaris
Phvul.005G022100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 1994907-2004906 Phaseolus vulgaris
Phvul.005G022100 10.0kb downstream 10.0kb downstream 17903 true Chr05: 1977004-1994906 Phaseolus vulgaris
Phvul.005G022100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 1977004-1987003 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314851 5265 Fabidae View MSA
124068602 5270 Rosid View MSA
123746424 5271 Pentapetalae View MSA
122793475 5272 Eudicot View MSA
122046929 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.4105 0.0 37.4731   Low
cufflinks 77.5383 0.0 238.765 High  
cufflinks 100.95 0.0 326.227 High  
cufflinks 59.7044 0.0 174.784 High  
cufflinks 115.636 0.0 379.873 High  
cufflinks 120.459 0.0 402.149 High  
cufflinks 122.665 0.0 412.67 High  
cufflinks 82.168 0.0 257.062 High  
cufflinks 177.707 0.0 646.274 High High
cufflinks 59.6565 0.0 176.344 High  
cufflinks 112.053 0.0 366.627 High  

0 Strain