Gene : Phvul.005G009000 P. vulgaris v2.1
Defline:  (1 of 1) 2.7.1.138 - Ceramide kinase / Acylsphingosine kinase Genomic Order:  86
Name:  ? Phvul.005G009000 Secondary Identifier:  ? PAC:37152972
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5129 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G009000 0.5kb upstream 0.5kb upstream 12939 true Chr05: 780073-793011 Phaseolus vulgaris
Phvul.005G009000 0.5kb upstream 0.5kb upstream 500 false Chr05: 792512-793011 Phaseolus vulgaris
Phvul.005G009000 0.5kb downstream 0.5kb downstream 12939 true Chr05: 779573-792511 Phaseolus vulgaris
Phvul.005G009000 0.5kb downstream 0.5kb downstream 500 false Chr05: 779573-780072 Phaseolus vulgaris
Phvul.005G009000 1.0kb upstream 1.0kb upstream 13439 true Chr05: 780073-793511 Phaseolus vulgaris
Phvul.005G009000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 792512-793511 Phaseolus vulgaris
Phvul.005G009000 1.0kb downstream 1.0kb downstream 13439 true Chr05: 779073-792511 Phaseolus vulgaris
Phvul.005G009000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 779073-780072 Phaseolus vulgaris
Phvul.005G009000 2.0kb upstream 2.0kb upstream 14439 true Chr05: 780073-794511 Phaseolus vulgaris
Phvul.005G009000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 792512-794511 Phaseolus vulgaris
Phvul.005G009000 2.0kb downstream 2.0kb downstream 14439 true Chr05: 778073-792511 Phaseolus vulgaris
Phvul.005G009000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 778073-780072 Phaseolus vulgaris
Phvul.005G009000 5.0kb upstream 5.0kb upstream 17439 true Chr05: 780073-797511 Phaseolus vulgaris
Phvul.005G009000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 792512-797511 Phaseolus vulgaris
Phvul.005G009000 5.0kb downstream 5.0kb downstream 17439 true Chr05: 775073-792511 Phaseolus vulgaris
Phvul.005G009000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 775073-780072 Phaseolus vulgaris
Phvul.005G009000 10.0kb upstream 10.0kb upstream 22439 true Chr05: 780073-802511 Phaseolus vulgaris
Phvul.005G009000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 792512-802511 Phaseolus vulgaris
Phvul.005G009000 10.0kb downstream 10.0kb downstream 22439 true Chr05: 770073-792511 Phaseolus vulgaris
Phvul.005G009000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 770073-780072 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308468 5265 Fabidae View MSA
124066629 5270 Rosid View MSA
123746434 5271 Pentapetalae View MSA
122791324 5272 Eudicot View MSA
122045057 5273 Angiosperm View MSA
121345163 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.58205 0.0 20.7409    
cufflinks 2.27207 0.0 12.3423   Low
cufflinks 3.91663 0.0 18.1683    
cufflinks 3.99749 0.0 16.741   High
cufflinks 2.34627 0.0 11.2763   Low
cufflinks 3.44819 0.0 16.4653    
cufflinks 3.64867 0.0 17.215    
cufflinks 3.44738 0.0 16.5907    
cufflinks 2.89099 0.0 14.8112    
cufflinks 3.60635 0.0 19.2389    
cufflinks 2.19476 0.0 11.0186   Low

0 Strain