Gene : Phvul.007G152500 P. vulgaris v2.1
Defline:  (1 of 1) KOG0683 - Glutamine synthetase Genomic Order:  1387
Name:  ? Phvul.007G152500 Secondary Identifier:  ? PAC:37166651
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris GLNSYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-3282 Phaseolus vulgaris pathologic  
Pvulgaris PWY-381 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6549 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6963 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6964 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G152500 0.5kb upstream 0.5kb upstream 10703 true Chr07: 25766202-25776904 Phaseolus vulgaris
Phvul.007G152500 0.5kb upstream 0.5kb upstream 500 false Chr07: 25776405-25776904 Phaseolus vulgaris
Phvul.007G152500 0.5kb downstream 0.5kb downstream 10703 true Chr07: 25765702-25776404 Phaseolus vulgaris
Phvul.007G152500 0.5kb downstream 0.5kb downstream 500 false Chr07: 25765702-25766201 Phaseolus vulgaris
Phvul.007G152500 1.0kb upstream 1.0kb upstream 11203 true Chr07: 25766202-25777404 Phaseolus vulgaris
Phvul.007G152500 1.0kb upstream 1.0kb upstream 1000 false Chr07: 25776405-25777404 Phaseolus vulgaris
Phvul.007G152500 1.0kb downstream 1.0kb downstream 11203 true Chr07: 25765202-25776404 Phaseolus vulgaris
Phvul.007G152500 1.0kb downstream 1.0kb downstream 1000 false Chr07: 25765202-25766201 Phaseolus vulgaris
Phvul.007G152500 2.0kb upstream 2.0kb upstream 12203 true Chr07: 25766202-25778404 Phaseolus vulgaris
Phvul.007G152500 2.0kb upstream 2.0kb upstream 2000 false Chr07: 25776405-25778404 Phaseolus vulgaris
Phvul.007G152500 2.0kb downstream 2.0kb downstream 12203 true Chr07: 25764202-25776404 Phaseolus vulgaris
Phvul.007G152500 2.0kb downstream 2.0kb downstream 2000 false Chr07: 25764202-25766201 Phaseolus vulgaris
Phvul.007G152500 5.0kb upstream 5.0kb upstream 15203 true Chr07: 25766202-25781404 Phaseolus vulgaris
Phvul.007G152500 5.0kb upstream 5.0kb upstream 5000 false Chr07: 25776405-25781404 Phaseolus vulgaris
Phvul.007G152500 5.0kb downstream 5.0kb downstream 15203 true Chr07: 25761202-25776404 Phaseolus vulgaris
Phvul.007G152500 5.0kb downstream 5.0kb downstream 5000 false Chr07: 25761202-25766201 Phaseolus vulgaris
Phvul.007G152500 10.0kb upstream 10.0kb upstream 20203 true Chr07: 25766202-25786404 Phaseolus vulgaris
Phvul.007G152500 10.0kb upstream 10.0kb upstream 10000 false Chr07: 25776405-25786404 Phaseolus vulgaris
Phvul.007G152500 10.0kb downstream 10.0kb downstream 20203 true Chr07: 25756202-25776404 Phaseolus vulgaris
Phvul.007G152500 10.0kb downstream 10.0kb downstream 10000 false Chr07: 25756202-25766201 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301363 5265 Fabidae View MSA
124062784 5270 Rosid View MSA
123749163 5271 Pentapetalae View MSA
122791802 5272 Eudicot View MSA
122046045 5273 Angiosperm View MSA
121348529 5274 Embryophyte View MSA
123428524 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.69642 0.0 18.0003   Low
cufflinks 12.6632 0.0 32.8778    
cufflinks 4.38518 0.0 12.2305   Low
cufflinks 7.61425 0.0 20.4322    
cufflinks 13.5541 0.0 35.184    
cufflinks 13.3943 0.0 34.7255    
cufflinks 19.8266 0.0 51.2711    
cufflinks 23.4375 0.0 60.8636   High
cufflinks 24.1264 0.0 62.5776   High
cufflinks 11.8736 0.0 30.8873    
cufflinks 10.1918 0.0 26.7734    

0 Strain