Gene : Phvul.007G154100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR22904:SF312 - CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN Genomic Order:  1403
Name:  ? Phvul.007G154100 Secondary Identifier:  ? PAC:37166263
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G154100 0.5kb upstream 0.5kb upstream 3857 true Chr07: 26054651-26058507 Phaseolus vulgaris
Phvul.007G154100 0.5kb upstream 0.5kb upstream 500 false Chr07: 26054651-26055150 Phaseolus vulgaris
Phvul.007G154100 0.5kb downstream 0.5kb downstream 3857 true Chr07: 26055151-26059007 Phaseolus vulgaris
Phvul.007G154100 0.5kb downstream 0.5kb downstream 500 false Chr07: 26058508-26059007 Phaseolus vulgaris
Phvul.007G154100 1.0kb upstream 1.0kb upstream 4357 true Chr07: 26054151-26058507 Phaseolus vulgaris
Phvul.007G154100 1.0kb upstream 1.0kb upstream 1000 false Chr07: 26054151-26055150 Phaseolus vulgaris
Phvul.007G154100 1.0kb downstream 1.0kb downstream 4357 true Chr07: 26055151-26059507 Phaseolus vulgaris
Phvul.007G154100 1.0kb downstream 1.0kb downstream 1000 false Chr07: 26058508-26059507 Phaseolus vulgaris
Phvul.007G154100 2.0kb upstream 2.0kb upstream 5357 true Chr07: 26053151-26058507 Phaseolus vulgaris
Phvul.007G154100 2.0kb upstream 2.0kb upstream 2000 false Chr07: 26053151-26055150 Phaseolus vulgaris
Phvul.007G154100 2.0kb downstream 2.0kb downstream 5357 true Chr07: 26055151-26060507 Phaseolus vulgaris
Phvul.007G154100 2.0kb downstream 2.0kb downstream 2000 false Chr07: 26058508-26060507 Phaseolus vulgaris
Phvul.007G154100 5.0kb upstream 5.0kb upstream 8357 true Chr07: 26050151-26058507 Phaseolus vulgaris
Phvul.007G154100 5.0kb upstream 5.0kb upstream 5000 false Chr07: 26050151-26055150 Phaseolus vulgaris
Phvul.007G154100 5.0kb downstream 5.0kb downstream 8357 true Chr07: 26055151-26063507 Phaseolus vulgaris
Phvul.007G154100 5.0kb downstream 5.0kb downstream 5000 false Chr07: 26058508-26063507 Phaseolus vulgaris
Phvul.007G154100 10.0kb upstream 10.0kb upstream 13357 true Chr07: 26045151-26058507 Phaseolus vulgaris
Phvul.007G154100 10.0kb upstream 10.0kb upstream 10000 false Chr07: 26045151-26055150 Phaseolus vulgaris
Phvul.007G154100 10.0kb downstream 10.0kb downstream 13357 true Chr07: 26055151-26068507 Phaseolus vulgaris
Phvul.007G154100 10.0kb downstream 10.0kb downstream 10000 false Chr07: 26058508-26068507 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299724 5265 Fabidae View MSA
124068096 5270 Rosid View MSA
123752266 5271 Pentapetalae View MSA
122787898 5272 Eudicot View MSA
122046706 5273 Angiosperm View MSA
121343893 5274 Embryophyte View MSA
123425417 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.8435 0.0 11.5925    
cufflinks 4.88736 0.0 14.3352    
cufflinks 2.66535 0.0 8.33886   Low
cufflinks 4.66229 0.0 13.8852    
cufflinks 2.06787 0.0 6.75263   Low
cufflinks 3.70877 0.0 11.211    
cufflinks 4.00962 0.0 12.0461    
cufflinks 5.01201 0.0 14.6132    
cufflinks 3.34264 0.0 10.271    
cufflinks 6.55748 0.0 18.6759   High
cufflinks 3.36227 0.0 10.3685    

0 Strain