Gene : Phvul.005G000800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  7
Name:  ? Phvul.005G000800 Secondary Identifier:  ? PAC:37153974
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G000800 0.5kb upstream 0.5kb upstream 9594 true Chr05: 75919-85512 Phaseolus vulgaris
Phvul.005G000800 0.5kb upstream 0.5kb upstream 500 false Chr05: 85013-85512 Phaseolus vulgaris
Phvul.005G000800 0.5kb downstream 0.5kb downstream 9594 true Chr05: 75419-85012 Phaseolus vulgaris
Phvul.005G000800 0.5kb downstream 0.5kb downstream 500 false Chr05: 75419-75918 Phaseolus vulgaris
Phvul.005G000800 1.0kb upstream 1.0kb upstream 10094 true Chr05: 75919-86012 Phaseolus vulgaris
Phvul.005G000800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 85013-86012 Phaseolus vulgaris
Phvul.005G000800 1.0kb downstream 1.0kb downstream 10094 true Chr05: 74919-85012 Phaseolus vulgaris
Phvul.005G000800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 74919-75918 Phaseolus vulgaris
Phvul.005G000800 2.0kb upstream 2.0kb upstream 11094 true Chr05: 75919-87012 Phaseolus vulgaris
Phvul.005G000800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 85013-87012 Phaseolus vulgaris
Phvul.005G000800 2.0kb downstream 2.0kb downstream 11094 true Chr05: 73919-85012 Phaseolus vulgaris
Phvul.005G000800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 73919-75918 Phaseolus vulgaris
Phvul.005G000800 5.0kb upstream 5.0kb upstream 14094 true Chr05: 75919-90012 Phaseolus vulgaris
Phvul.005G000800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 85013-90012 Phaseolus vulgaris
Phvul.005G000800 5.0kb downstream 5.0kb downstream 14094 true Chr05: 70919-85012 Phaseolus vulgaris
Phvul.005G000800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 70919-75918 Phaseolus vulgaris
Phvul.005G000800 10.0kb upstream 10.0kb upstream 19094 true Chr05: 75919-95012 Phaseolus vulgaris
Phvul.005G000800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 85013-95012 Phaseolus vulgaris
Phvul.005G000800 10.0kb downstream 10.0kb downstream 19094 true Chr05: 65919-85012 Phaseolus vulgaris
Phvul.005G000800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 65919-75918 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041498 5273 Angiosperm View MSA
122307541 5265 Fabidae View MSA
124070961 5270 Rosid View MSA
123750498 5271 Pentapetalae View MSA
122788511 5272 Eudicot View MSA
121351189 5274 Embryophyte View MSA
123425600 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.84209 0.0 32.7312    
cufflinks 8.98672 0.0 30.2659    
cufflinks 9.05857 0.0 30.4001    
cufflinks 6.62858 0.0 21.2683   Low
cufflinks 7.78832 0.0 24.4787   Low
cufflinks 10.036 0.0 30.1891    
cufflinks 13.2811 0.0 38.1901   High
cufflinks 12.6204 0.0 36.6067   High
cufflinks 11.754 0.0 38.1692    
cufflinks 11.2318 0.0 33.2355    
cufflinks 10.2657 0.0 30.9523    

0 Strain