Gene : Phvul.007G143200 P. vulgaris v2.1
Defline:  (1 of 4) 5.3.99.9 - Neoxanthin synthase / NSY Genomic Order:  1296
Name:  ? Phvul.007G143200 Secondary Identifier:  ? PAC:37165477
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6809 Phaseolus vulgaris pathologic  
Pvulgaris PWY-695 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G143200 0.5kb upstream 0.5kb upstream 3835 true Chr07: 23409075-23412909 Phaseolus vulgaris
Phvul.007G143200 0.5kb upstream 0.5kb upstream 500 false Chr07: 23412410-23412909 Phaseolus vulgaris
Phvul.007G143200 0.5kb downstream 0.5kb downstream 3835 true Chr07: 23408575-23412409 Phaseolus vulgaris
Phvul.007G143200 0.5kb downstream 0.5kb downstream 500 false Chr07: 23408575-23409074 Phaseolus vulgaris
Phvul.007G143200 1.0kb upstream 1.0kb upstream 4335 true Chr07: 23409075-23413409 Phaseolus vulgaris
Phvul.007G143200 1.0kb upstream 1.0kb upstream 1000 false Chr07: 23412410-23413409 Phaseolus vulgaris
Phvul.007G143200 1.0kb downstream 1.0kb downstream 4335 true Chr07: 23408075-23412409 Phaseolus vulgaris
Phvul.007G143200 1.0kb downstream 1.0kb downstream 1000 false Chr07: 23408075-23409074 Phaseolus vulgaris
Phvul.007G143200 2.0kb upstream 2.0kb upstream 5335 true Chr07: 23409075-23414409 Phaseolus vulgaris
Phvul.007G143200 2.0kb upstream 2.0kb upstream 2000 false Chr07: 23412410-23414409 Phaseolus vulgaris
Phvul.007G143200 2.0kb downstream 2.0kb downstream 5335 true Chr07: 23407075-23412409 Phaseolus vulgaris
Phvul.007G143200 2.0kb downstream 2.0kb downstream 2000 false Chr07: 23407075-23409074 Phaseolus vulgaris
Phvul.007G143200 5.0kb upstream 5.0kb upstream 8335 true Chr07: 23409075-23417409 Phaseolus vulgaris
Phvul.007G143200 5.0kb upstream 5.0kb upstream 5000 false Chr07: 23412410-23417409 Phaseolus vulgaris
Phvul.007G143200 5.0kb downstream 5.0kb downstream 8335 true Chr07: 23404075-23412409 Phaseolus vulgaris
Phvul.007G143200 5.0kb downstream 5.0kb downstream 5000 false Chr07: 23404075-23409074 Phaseolus vulgaris
Phvul.007G143200 10.0kb upstream 10.0kb upstream 13335 true Chr07: 23409075-23422409 Phaseolus vulgaris
Phvul.007G143200 10.0kb upstream 10.0kb upstream 10000 false Chr07: 23412410-23422409 Phaseolus vulgaris
Phvul.007G143200 10.0kb downstream 10.0kb downstream 13335 true Chr07: 23399075-23412409 Phaseolus vulgaris
Phvul.007G143200 10.0kb downstream 10.0kb downstream 10000 false Chr07: 23399075-23409074 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312106 5265 Fabidae View MSA
124062178 5270 Rosid View MSA
123748588 5271 Pentapetalae View MSA
122790006 5272 Eudicot View MSA
122047205 5273 Angiosperm View MSA
121346000 5274 Embryophyte View MSA
123425892 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.01101 0.0 9.959    
cufflinks 9.09458 0.0 26.6405   High
cufflinks 5.92554 0.0 18.0996    
cufflinks 6.53795 0.0 20.0206    
cufflinks 4.31991 0.0 13.8312    
cufflinks 6.17783 0.0 18.9098    
cufflinks 2.32464 0.0 7.99318    
cufflinks 1.49244 0.0 5.34512   Low
cufflinks 3.25636 0.0 10.8122    
cufflinks 1.57318 0.0 5.60932   Low
cufflinks 3.55719 0.0 11.6702    

0 Strain