Gene : Phvul.005G001200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR22835//PTHR22835:SF207 - ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  11
Name:  ? Phvul.005G001200 Secondary Identifier:  ? PAC:37154217
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris LIPAS-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G001200 0.5kb upstream 0.5kb upstream 2915 true Chr05: 115022-117936 Phaseolus vulgaris
Phvul.005G001200 0.5kb upstream 0.5kb upstream 500 false Chr05: 117437-117936 Phaseolus vulgaris
Phvul.005G001200 0.5kb downstream 0.5kb downstream 2915 true Chr05: 114522-117436 Phaseolus vulgaris
Phvul.005G001200 0.5kb downstream 0.5kb downstream 500 false Chr05: 114522-115021 Phaseolus vulgaris
Phvul.005G001200 1.0kb upstream 1.0kb upstream 3415 true Chr05: 115022-118436 Phaseolus vulgaris
Phvul.005G001200 1.0kb upstream 1.0kb upstream 1000 false Chr05: 117437-118436 Phaseolus vulgaris
Phvul.005G001200 1.0kb downstream 1.0kb downstream 3415 true Chr05: 114022-117436 Phaseolus vulgaris
Phvul.005G001200 1.0kb downstream 1.0kb downstream 1000 false Chr05: 114022-115021 Phaseolus vulgaris
Phvul.005G001200 2.0kb upstream 2.0kb upstream 4415 true Chr05: 115022-119436 Phaseolus vulgaris
Phvul.005G001200 2.0kb upstream 2.0kb upstream 2000 false Chr05: 117437-119436 Phaseolus vulgaris
Phvul.005G001200 2.0kb downstream 2.0kb downstream 4415 true Chr05: 113022-117436 Phaseolus vulgaris
Phvul.005G001200 2.0kb downstream 2.0kb downstream 2000 false Chr05: 113022-115021 Phaseolus vulgaris
Phvul.005G001200 5.0kb upstream 5.0kb upstream 7415 true Chr05: 115022-122436 Phaseolus vulgaris
Phvul.005G001200 5.0kb upstream 5.0kb upstream 5000 false Chr05: 117437-122436 Phaseolus vulgaris
Phvul.005G001200 5.0kb downstream 5.0kb downstream 7415 true Chr05: 110022-117436 Phaseolus vulgaris
Phvul.005G001200 5.0kb downstream 5.0kb downstream 5000 false Chr05: 110022-115021 Phaseolus vulgaris
Phvul.005G001200 10.0kb upstream 10.0kb upstream 12415 true Chr05: 115022-127436 Phaseolus vulgaris
Phvul.005G001200 10.0kb upstream 10.0kb upstream 10000 false Chr05: 117437-127436 Phaseolus vulgaris
Phvul.005G001200 10.0kb downstream 10.0kb downstream 12415 true Chr05: 105022-117436 Phaseolus vulgaris
Phvul.005G001200 10.0kb downstream 10.0kb downstream 10000 false Chr05: 105022-115021 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298985 5265 Fabidae View MSA
124067838 5270 Rosid View MSA
123737678 5271 Pentapetalae View MSA
122786109 5272 Eudicot View MSA
122042489 5273 Angiosperm View MSA
121351762 5274 Embryophyte View MSA
123428079 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.605492 0.0 2.2333    
cufflinks 2.60552 0.0 8.2245    
cufflinks 33.607 0.0 86.8968   High
cufflinks 0.355625 0.0 1.37456 Low  
cufflinks 2.05667 0.0 6.7313    
cufflinks 22.9495 0.0 59.5694   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0180685 0.0 0.0914852 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.12138 0.0 0.509818 Low  
cufflinks 3.73898 0.0 11.4125    

0 Strain