Gene : Phvul.005G002200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10996:SF108 - D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE-LIKE PROTEIN Genomic Order:  21
Name:  ? Phvul.005G002200 Secondary Identifier:  ? PAC:37152545
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G002200 0.5kb upstream 0.5kb upstream 6555 true Chr05: 168773-175327 Phaseolus vulgaris
Phvul.005G002200 0.5kb upstream 0.5kb upstream 500 false Chr05: 168773-169272 Phaseolus vulgaris
Phvul.005G002200 0.5kb downstream 0.5kb downstream 6555 true Chr05: 169273-175827 Phaseolus vulgaris
Phvul.005G002200 0.5kb downstream 0.5kb downstream 500 false Chr05: 175328-175827 Phaseolus vulgaris
Phvul.005G002200 1.0kb upstream 1.0kb upstream 7055 true Chr05: 168273-175327 Phaseolus vulgaris
Phvul.005G002200 1.0kb upstream 1.0kb upstream 1000 false Chr05: 168273-169272 Phaseolus vulgaris
Phvul.005G002200 1.0kb downstream 1.0kb downstream 7055 true Chr05: 169273-176327 Phaseolus vulgaris
Phvul.005G002200 1.0kb downstream 1.0kb downstream 1000 false Chr05: 175328-176327 Phaseolus vulgaris
Phvul.005G002200 2.0kb upstream 2.0kb upstream 8055 true Chr05: 167273-175327 Phaseolus vulgaris
Phvul.005G002200 2.0kb upstream 2.0kb upstream 2000 false Chr05: 167273-169272 Phaseolus vulgaris
Phvul.005G002200 2.0kb downstream 2.0kb downstream 8055 true Chr05: 169273-177327 Phaseolus vulgaris
Phvul.005G002200 2.0kb downstream 2.0kb downstream 2000 false Chr05: 175328-177327 Phaseolus vulgaris
Phvul.005G002200 5.0kb upstream 5.0kb upstream 11055 true Chr05: 164273-175327 Phaseolus vulgaris
Phvul.005G002200 5.0kb upstream 5.0kb upstream 5000 false Chr05: 164273-169272 Phaseolus vulgaris
Phvul.005G002200 5.0kb downstream 5.0kb downstream 11055 true Chr05: 169273-180327 Phaseolus vulgaris
Phvul.005G002200 5.0kb downstream 5.0kb downstream 5000 false Chr05: 175328-180327 Phaseolus vulgaris
Phvul.005G002200 10.0kb upstream 10.0kb upstream 16055 true Chr05: 159273-175327 Phaseolus vulgaris
Phvul.005G002200 10.0kb upstream 10.0kb upstream 10000 false Chr05: 159273-169272 Phaseolus vulgaris
Phvul.005G002200 10.0kb downstream 10.0kb downstream 16055 true Chr05: 169273-185327 Phaseolus vulgaris
Phvul.005G002200 10.0kb downstream 10.0kb downstream 10000 false Chr05: 175328-185327 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309638 5265 Fabidae View MSA
124063088 5270 Rosid View MSA
123747580 5271 Pentapetalae View MSA
122795035 5272 Eudicot View MSA
122051675 5273 Angiosperm View MSA
121344696 5274 Embryophyte View MSA
123427510 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.48582 0.0 35.0609   High
cufflinks 4.52792 0.0 16.8715    
cufflinks 5.60448 0.0 20.72    
cufflinks 11.0669 0.0 37.164   High
cufflinks 5.19435 0.0 19.0941    
cufflinks 4.6154 0.0 17.1299    
cufflinks 5.51783 0.0 19.7583    
cufflinks 6.72268 0.0 26.2589    
cufflinks 5.27134 0.0 19.3049    
cufflinks 4.98213 0.0 18.3086    
cufflinks 4.79361 0.0 17.9127    

0 Strain