Gene : Phvul.005G002500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR23344:SF28 - GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1 Genomic Order:  24
Name:  ? Phvul.005G002500 Secondary Identifier:  ? PAC:37152816
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7409 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G002500 0.5kb upstream 0.5kb upstream 5290 true Chr05: 207209-212498 Phaseolus vulgaris
Phvul.005G002500 0.5kb upstream 0.5kb upstream 500 false Chr05: 211999-212498 Phaseolus vulgaris
Phvul.005G002500 0.5kb downstream 0.5kb downstream 5290 true Chr05: 206709-211998 Phaseolus vulgaris
Phvul.005G002500 0.5kb downstream 0.5kb downstream 500 false Chr05: 206709-207208 Phaseolus vulgaris
Phvul.005G002500 1.0kb upstream 1.0kb upstream 5790 true Chr05: 207209-212998 Phaseolus vulgaris
Phvul.005G002500 1.0kb upstream 1.0kb upstream 1000 false Chr05: 211999-212998 Phaseolus vulgaris
Phvul.005G002500 1.0kb downstream 1.0kb downstream 5790 true Chr05: 206209-211998 Phaseolus vulgaris
Phvul.005G002500 1.0kb downstream 1.0kb downstream 1000 false Chr05: 206209-207208 Phaseolus vulgaris
Phvul.005G002500 2.0kb upstream 2.0kb upstream 6790 true Chr05: 207209-213998 Phaseolus vulgaris
Phvul.005G002500 2.0kb upstream 2.0kb upstream 2000 false Chr05: 211999-213998 Phaseolus vulgaris
Phvul.005G002500 2.0kb downstream 2.0kb downstream 6790 true Chr05: 205209-211998 Phaseolus vulgaris
Phvul.005G002500 2.0kb downstream 2.0kb downstream 2000 false Chr05: 205209-207208 Phaseolus vulgaris
Phvul.005G002500 5.0kb upstream 5.0kb upstream 9790 true Chr05: 207209-216998 Phaseolus vulgaris
Phvul.005G002500 5.0kb upstream 5.0kb upstream 5000 false Chr05: 211999-216998 Phaseolus vulgaris
Phvul.005G002500 5.0kb downstream 5.0kb downstream 9790 true Chr05: 202209-211998 Phaseolus vulgaris
Phvul.005G002500 5.0kb downstream 5.0kb downstream 5000 false Chr05: 202209-207208 Phaseolus vulgaris
Phvul.005G002500 10.0kb upstream 10.0kb upstream 14790 true Chr05: 207209-221998 Phaseolus vulgaris
Phvul.005G002500 10.0kb upstream 10.0kb upstream 10000 false Chr05: 211999-221998 Phaseolus vulgaris
Phvul.005G002500 10.0kb downstream 10.0kb downstream 14790 true Chr05: 197209-211998 Phaseolus vulgaris
Phvul.005G002500 10.0kb downstream 10.0kb downstream 10000 false Chr05: 197209-207208 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300579 5265 Fabidae View MSA
124067594 5270 Rosid View MSA
123739367 5271 Pentapetalae View MSA
122793263 5272 Eudicot View MSA
122047219 5273 Angiosperm View MSA
121349016 5274 Embryophyte View MSA
123427418 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.30273 0.0 7.92506   Low
cufflinks 2.7952 0.0 9.42769    
cufflinks 5.43332 0.0 16.9718   High
cufflinks 3.67322 0.0 12.0242    
cufflinks 3.22676 0.0 10.7744    
cufflinks 3.18449 0.0 10.5865    
cufflinks 3.53749 0.0 11.6532    
cufflinks 4.63565 0.0 14.763   High
cufflinks 2.86667 0.0 9.68609    
cufflinks 2.88637 0.0 9.68516    
cufflinks 4.03162 0.0 13.0943    

0 Strain