Gene : Phvul.004G171700 P. vulgaris v2.1
Defline:  (1 of 2) PF01535//PF13812//PF14432 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  1760
Name:  ? Phvul.004G171700 Secondary Identifier:  ? PAC:37163444
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G171700 0.5kb upstream 0.5kb upstream 2149 true Chr04: 47487283-47489431 Phaseolus vulgaris
Phvul.004G171700 0.5kb upstream 0.5kb upstream 500 false Chr04: 47487283-47487782 Phaseolus vulgaris
Phvul.004G171700 0.5kb downstream 0.5kb downstream 2149 true Chr04: 47487783-47489931 Phaseolus vulgaris
Phvul.004G171700 0.5kb downstream 0.5kb downstream 500 false Chr04: 47489432-47489931 Phaseolus vulgaris
Phvul.004G171700 1.0kb upstream 1.0kb upstream 2649 true Chr04: 47486783-47489431 Phaseolus vulgaris
Phvul.004G171700 1.0kb upstream 1.0kb upstream 1000 false Chr04: 47486783-47487782 Phaseolus vulgaris
Phvul.004G171700 1.0kb downstream 1.0kb downstream 2649 true Chr04: 47487783-47490431 Phaseolus vulgaris
Phvul.004G171700 1.0kb downstream 1.0kb downstream 1000 false Chr04: 47489432-47490431 Phaseolus vulgaris
Phvul.004G171700 2.0kb upstream 2.0kb upstream 3649 true Chr04: 47485783-47489431 Phaseolus vulgaris
Phvul.004G171700 2.0kb upstream 2.0kb upstream 2000 false Chr04: 47485783-47487782 Phaseolus vulgaris
Phvul.004G171700 2.0kb downstream 2.0kb downstream 3649 true Chr04: 47487783-47491431 Phaseolus vulgaris
Phvul.004G171700 2.0kb downstream 2.0kb downstream 2000 false Chr04: 47489432-47491431 Phaseolus vulgaris
Phvul.004G171700 5.0kb upstream 5.0kb upstream 6649 true Chr04: 47482783-47489431 Phaseolus vulgaris
Phvul.004G171700 5.0kb upstream 5.0kb upstream 5000 false Chr04: 47482783-47487782 Phaseolus vulgaris
Phvul.004G171700 5.0kb downstream 5.0kb downstream 6649 true Chr04: 47487783-47494431 Phaseolus vulgaris
Phvul.004G171700 5.0kb downstream 5.0kb downstream 5000 false Chr04: 47489432-47494431 Phaseolus vulgaris
Phvul.004G171700 10.0kb upstream 10.0kb upstream 11649 true Chr04: 47477783-47489431 Phaseolus vulgaris
Phvul.004G171700 10.0kb upstream 10.0kb upstream 10000 false Chr04: 47477783-47487782 Phaseolus vulgaris
Phvul.004G171700 10.0kb downstream 10.0kb downstream 11649 true Chr04: 47487783-47499431 Phaseolus vulgaris
Phvul.004G171700 10.0kb downstream 10.0kb downstream 10000 false Chr04: 47489432-47499431 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299810 5265 Fabidae View MSA
124072182 5270 Rosid View MSA
123750280 5271 Pentapetalae View MSA
122796437 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.5434 0.0 42.9052    
cufflinks 6.4409 0.0 17.7506    
cufflinks 31.0791 0.0 80.7688   High
cufflinks 8.59578 0.0 23.3238    
cufflinks 5.46479 0.0 15.3659    
cufflinks 15.9075 0.0 41.2978    
cufflinks 1.83594 0.0 5.77193   Low
cufflinks 2.37956 0.0 7.25642    
cufflinks 1.11829 0.0 3.72439   Low
cufflinks 7.65771 0.0 20.835    
cufflinks 5.76343 0.0 16.0786    

0 Strain