Gene : Phvul.004G174700 P. vulgaris v2.1
Defline:  (1 of 2) K01887 - arginyl-tRNA synthetase (RARS, argS) Genomic Order:  1790
Name:  ? Phvul.004G174700 Secondary Identifier:  ? PAC:37162565
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G174700 0.5kb upstream 0.5kb upstream 8861 true Chr04: 47710739-47719599 Phaseolus vulgaris
Phvul.004G174700 0.5kb upstream 0.5kb upstream 500 false Chr04: 47719100-47719599 Phaseolus vulgaris
Phvul.004G174700 0.5kb downstream 0.5kb downstream 8861 true Chr04: 47710239-47719099 Phaseolus vulgaris
Phvul.004G174700 0.5kb downstream 0.5kb downstream 500 false Chr04: 47710239-47710738 Phaseolus vulgaris
Phvul.004G174700 1.0kb upstream 1.0kb upstream 9361 true Chr04: 47710739-47720099 Phaseolus vulgaris
Phvul.004G174700 1.0kb upstream 1.0kb upstream 1000 false Chr04: 47719100-47720099 Phaseolus vulgaris
Phvul.004G174700 1.0kb downstream 1.0kb downstream 9361 true Chr04: 47709739-47719099 Phaseolus vulgaris
Phvul.004G174700 1.0kb downstream 1.0kb downstream 1000 false Chr04: 47709739-47710738 Phaseolus vulgaris
Phvul.004G174700 2.0kb upstream 2.0kb upstream 10361 true Chr04: 47710739-47721099 Phaseolus vulgaris
Phvul.004G174700 2.0kb upstream 2.0kb upstream 2000 false Chr04: 47719100-47721099 Phaseolus vulgaris
Phvul.004G174700 2.0kb downstream 2.0kb downstream 10361 true Chr04: 47708739-47719099 Phaseolus vulgaris
Phvul.004G174700 2.0kb downstream 2.0kb downstream 2000 false Chr04: 47708739-47710738 Phaseolus vulgaris
Phvul.004G174700 5.0kb upstream 5.0kb upstream 13361 true Chr04: 47710739-47724099 Phaseolus vulgaris
Phvul.004G174700 5.0kb upstream 5.0kb upstream 5000 false Chr04: 47719100-47724099 Phaseolus vulgaris
Phvul.004G174700 5.0kb downstream 5.0kb downstream 13361 true Chr04: 47705739-47719099 Phaseolus vulgaris
Phvul.004G174700 5.0kb downstream 5.0kb downstream 5000 false Chr04: 47705739-47710738 Phaseolus vulgaris
Phvul.004G174700 10.0kb upstream 10.0kb upstream 18361 true Chr04: 47710739-47729099 Phaseolus vulgaris
Phvul.004G174700 10.0kb upstream 10.0kb upstream 10000 false Chr04: 47719100-47729099 Phaseolus vulgaris
Phvul.004G174700 10.0kb downstream 10.0kb downstream 18361 true Chr04: 47700739-47719099 Phaseolus vulgaris
Phvul.004G174700 10.0kb downstream 10.0kb downstream 10000 false Chr04: 47700739-47710738 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306333 5265 Fabidae View MSA
124068746 5270 Rosid View MSA
123739648 5271 Pentapetalae View MSA
122789806 5272 Eudicot View MSA
122042876 5273 Angiosperm View MSA
121345157 5274 Embryophyte View MSA
123426289 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.6354 0.0 17.9289    
cufflinks 6.76569 0.0 18.2562    
cufflinks 29.2491 0.0 76.5287   High
cufflinks 7.03171 0.0 19.0798    
cufflinks 5.2958 0.0 14.7088    
cufflinks 15.5017 0.0 40.1004   High
cufflinks 4.16448 0.0 11.7276    
cufflinks 5.31517 0.0 14.579    
cufflinks 3.72847 0.0 10.6444   Low
cufflinks 8.56504 0.0 22.7355    
cufflinks 4.76647 0.0 13.3208    

0 Strain