Gene : Phvul.007G138900 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11638//PTHR11638:SF106 - ATP-DEPENDENT CLP PROTEASE // SUBFAMILY NOT NAMED Genomic Order:  1255
Name:  ? Phvul.007G138900 Secondary Identifier:  ? PAC:37164865
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G138900 0.5kb upstream 0.5kb upstream 3729 true Chr07: 22046579-22050307 Phaseolus vulgaris
Phvul.007G138900 0.5kb upstream 0.5kb upstream 500 false Chr07: 22049808-22050307 Phaseolus vulgaris
Phvul.007G138900 0.5kb downstream 0.5kb downstream 3729 true Chr07: 22046079-22049807 Phaseolus vulgaris
Phvul.007G138900 0.5kb downstream 0.5kb downstream 500 false Chr07: 22046079-22046578 Phaseolus vulgaris
Phvul.007G138900 1.0kb upstream 1.0kb upstream 4229 true Chr07: 22046579-22050807 Phaseolus vulgaris
Phvul.007G138900 1.0kb upstream 1.0kb upstream 1000 false Chr07: 22049808-22050807 Phaseolus vulgaris
Phvul.007G138900 1.0kb downstream 1.0kb downstream 4229 true Chr07: 22045579-22049807 Phaseolus vulgaris
Phvul.007G138900 1.0kb downstream 1.0kb downstream 1000 false Chr07: 22045579-22046578 Phaseolus vulgaris
Phvul.007G138900 2.0kb upstream 2.0kb upstream 5229 true Chr07: 22046579-22051807 Phaseolus vulgaris
Phvul.007G138900 2.0kb upstream 2.0kb upstream 2000 false Chr07: 22049808-22051807 Phaseolus vulgaris
Phvul.007G138900 2.0kb downstream 2.0kb downstream 5229 true Chr07: 22044579-22049807 Phaseolus vulgaris
Phvul.007G138900 2.0kb downstream 2.0kb downstream 2000 false Chr07: 22044579-22046578 Phaseolus vulgaris
Phvul.007G138900 5.0kb upstream 5.0kb upstream 8229 true Chr07: 22046579-22054807 Phaseolus vulgaris
Phvul.007G138900 5.0kb upstream 5.0kb upstream 5000 false Chr07: 22049808-22054807 Phaseolus vulgaris
Phvul.007G138900 5.0kb downstream 5.0kb downstream 8229 true Chr07: 22041579-22049807 Phaseolus vulgaris
Phvul.007G138900 5.0kb downstream 5.0kb downstream 5000 false Chr07: 22041579-22046578 Phaseolus vulgaris
Phvul.007G138900 10.0kb upstream 10.0kb upstream 13229 true Chr07: 22046579-22059807 Phaseolus vulgaris
Phvul.007G138900 10.0kb upstream 10.0kb upstream 10000 false Chr07: 22049808-22059807 Phaseolus vulgaris
Phvul.007G138900 10.0kb downstream 10.0kb downstream 13229 true Chr07: 22036579-22049807 Phaseolus vulgaris
Phvul.007G138900 10.0kb downstream 10.0kb downstream 10000 false Chr07: 22036579-22046578 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309511 5265 Fabidae View MSA
124070007 5270 Rosid View MSA
123743418 5271 Pentapetalae View MSA
122787302 5272 Eudicot View MSA
122049419 5273 Angiosperm View MSA
121351273 5274 Embryophyte View MSA
123382090 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.939794 0.0 3.06523   Low
cufflinks 6.30432 0.0 16.8831   High
cufflinks 4.51379 0.0 12.3911    
cufflinks 0.677333 0.0 2.31358   Low
cufflinks 3.4346 0.0 9.76668    
cufflinks 8.66364 0.0 22.7131   High
cufflinks 4.36401 0.0 12.0426    
cufflinks 1.91534 0.0 5.72457    
cufflinks 3.65175 0.0 10.2562    
cufflinks 2.12024 0.0 6.31745    
cufflinks 2.83422 0.0 8.1942    

0 Strain