Gene : Phvul.004G178200 P. vulgaris v2.1
Defline:  (1 of 3) 5.4.99.8 - Cycloartenol synthase / 2,3-epoxysqualene--cycloartenol cyclase Genomic Order:  1825
Name:  ? Phvul.004G178200 Secondary Identifier:  ? PAC:37163494
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-2541 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G178200 0.5kb upstream 0.5kb upstream 7475 true Chr04: 48003917-48011391 Phaseolus vulgaris
Phvul.004G178200 0.5kb upstream 0.5kb upstream 500 false Chr04: 48010892-48011391 Phaseolus vulgaris
Phvul.004G178200 0.5kb downstream 0.5kb downstream 7475 true Chr04: 48003417-48010891 Phaseolus vulgaris
Phvul.004G178200 0.5kb downstream 0.5kb downstream 500 false Chr04: 48003417-48003916 Phaseolus vulgaris
Phvul.004G178200 1.0kb upstream 1.0kb upstream 7975 true Chr04: 48003917-48011891 Phaseolus vulgaris
Phvul.004G178200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 48010892-48011891 Phaseolus vulgaris
Phvul.004G178200 1.0kb downstream 1.0kb downstream 7975 true Chr04: 48002917-48010891 Phaseolus vulgaris
Phvul.004G178200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 48002917-48003916 Phaseolus vulgaris
Phvul.004G178200 2.0kb upstream 2.0kb upstream 8975 true Chr04: 48003917-48012891 Phaseolus vulgaris
Phvul.004G178200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 48010892-48012891 Phaseolus vulgaris
Phvul.004G178200 2.0kb downstream 2.0kb downstream 8975 true Chr04: 48001917-48010891 Phaseolus vulgaris
Phvul.004G178200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 48001917-48003916 Phaseolus vulgaris
Phvul.004G178200 5.0kb upstream 5.0kb upstream 11975 true Chr04: 48003917-48015891 Phaseolus vulgaris
Phvul.004G178200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 48010892-48015891 Phaseolus vulgaris
Phvul.004G178200 5.0kb downstream 5.0kb downstream 11975 true Chr04: 47998917-48010891 Phaseolus vulgaris
Phvul.004G178200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 47998917-48003916 Phaseolus vulgaris
Phvul.004G178200 10.0kb upstream 10.0kb upstream 16975 true Chr04: 48003917-48020891 Phaseolus vulgaris
Phvul.004G178200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 48010892-48020891 Phaseolus vulgaris
Phvul.004G178200 10.0kb downstream 10.0kb downstream 16975 true Chr04: 47993917-48010891 Phaseolus vulgaris
Phvul.004G178200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 47993917-48003916 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314535 5265 Fabidae View MSA
124061853 5270 Rosid View MSA
123750129 5271 Pentapetalae View MSA
122795524 5272 Eudicot View MSA
122043543 5273 Angiosperm View MSA
121345283 5274 Embryophyte View MSA
123424991 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.00991983 0.0 0.0495458 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0578439 0.0 0.243954 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 12.5902 0.0 32.5644    
cufflinks 5.90196 0.0 15.766    
cufflinks 4.66758 0.0 12.7701    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain