Gene : Phvul.004G178400 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31355:SF5 - ARM REPEAT SUPERFAMILY PROTEIN Genomic Order:  1827
Name:  ? Phvul.004G178400 Secondary Identifier:  ? PAC:37163420
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G178400 0.5kb upstream 0.5kb upstream 4843 true Chr04: 48026435-48031277 Phaseolus vulgaris
Phvul.004G178400 0.5kb upstream 0.5kb upstream 500 false Chr04: 48026435-48026934 Phaseolus vulgaris
Phvul.004G178400 0.5kb downstream 0.5kb downstream 4843 true Chr04: 48026935-48031777 Phaseolus vulgaris
Phvul.004G178400 0.5kb downstream 0.5kb downstream 500 false Chr04: 48031278-48031777 Phaseolus vulgaris
Phvul.004G178400 1.0kb upstream 1.0kb upstream 5343 true Chr04: 48025935-48031277 Phaseolus vulgaris
Phvul.004G178400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 48025935-48026934 Phaseolus vulgaris
Phvul.004G178400 1.0kb downstream 1.0kb downstream 5343 true Chr04: 48026935-48032277 Phaseolus vulgaris
Phvul.004G178400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 48031278-48032277 Phaseolus vulgaris
Phvul.004G178400 2.0kb upstream 2.0kb upstream 6343 true Chr04: 48024935-48031277 Phaseolus vulgaris
Phvul.004G178400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 48024935-48026934 Phaseolus vulgaris
Phvul.004G178400 2.0kb downstream 2.0kb downstream 6343 true Chr04: 48026935-48033277 Phaseolus vulgaris
Phvul.004G178400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 48031278-48033277 Phaseolus vulgaris
Phvul.004G178400 5.0kb upstream 5.0kb upstream 9343 true Chr04: 48021935-48031277 Phaseolus vulgaris
Phvul.004G178400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 48021935-48026934 Phaseolus vulgaris
Phvul.004G178400 5.0kb downstream 5.0kb downstream 9343 true Chr04: 48026935-48036277 Phaseolus vulgaris
Phvul.004G178400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 48031278-48036277 Phaseolus vulgaris
Phvul.004G178400 10.0kb upstream 10.0kb upstream 14343 true Chr04: 48016935-48031277 Phaseolus vulgaris
Phvul.004G178400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 48016935-48026934 Phaseolus vulgaris
Phvul.004G178400 10.0kb downstream 10.0kb downstream 14343 true Chr04: 48026935-48041277 Phaseolus vulgaris
Phvul.004G178400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 48031278-48041277 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302757 5265 Fabidae View MSA
124068750 5270 Rosid View MSA
123737726 5271 Pentapetalae View MSA
122786179 5272 Eudicot View MSA
122044340 5273 Angiosperm View MSA
121344620 5274 Embryophyte View MSA
123426800 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.69346 0.0 5.133    
cufflinks 8.90298 0.0 23.2649   High
cufflinks 1.90048 0.0 5.68212    
cufflinks 0.763163 0.0 2.53958   Low
cufflinks 4.83508 0.0 13.2196    
cufflinks 4.67505 0.0 12.7802    
cufflinks 4.26204 0.0 11.7133    
cufflinks 3.33048 0.0 9.35156    
cufflinks 4.94371 0.0 13.4348    
cufflinks 0.180589 0.0 0.689478 Low Low
cufflinks 4.57757 0.0 12.5613    

0 Strain