Gene : Phvul.004G177600 P. vulgaris v2.1
Defline:  (1 of 17) PF02309//PF02362//PF06507 - AUX/IAA family (AUX_IAA) // B3 DNA binding domain (B3) // Auxin response factor (Auxin_resp) Genomic Order:  1819
Name:  ? Phvul.004G177600 Secondary Identifier:  ? PAC:37163349
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G177600 0.5kb upstream 0.5kb upstream 6419 true Chr04: 47971534-47977952 Phaseolus vulgaris
Phvul.004G177600 0.5kb upstream 0.5kb upstream 500 false Chr04: 47971534-47972033 Phaseolus vulgaris
Phvul.004G177600 0.5kb downstream 0.5kb downstream 6419 true Chr04: 47972034-47978452 Phaseolus vulgaris
Phvul.004G177600 0.5kb downstream 0.5kb downstream 500 false Chr04: 47977953-47978452 Phaseolus vulgaris
Phvul.004G177600 1.0kb upstream 1.0kb upstream 6919 true Chr04: 47971034-47977952 Phaseolus vulgaris
Phvul.004G177600 1.0kb upstream 1.0kb upstream 1000 false Chr04: 47971034-47972033 Phaseolus vulgaris
Phvul.004G177600 1.0kb downstream 1.0kb downstream 6919 true Chr04: 47972034-47978952 Phaseolus vulgaris
Phvul.004G177600 1.0kb downstream 1.0kb downstream 1000 false Chr04: 47977953-47978952 Phaseolus vulgaris
Phvul.004G177600 2.0kb upstream 2.0kb upstream 7919 true Chr04: 47970034-47977952 Phaseolus vulgaris
Phvul.004G177600 2.0kb upstream 2.0kb upstream 2000 false Chr04: 47970034-47972033 Phaseolus vulgaris
Phvul.004G177600 2.0kb downstream 2.0kb downstream 7919 true Chr04: 47972034-47979952 Phaseolus vulgaris
Phvul.004G177600 2.0kb downstream 2.0kb downstream 2000 false Chr04: 47977953-47979952 Phaseolus vulgaris
Phvul.004G177600 5.0kb upstream 5.0kb upstream 10919 true Chr04: 47967034-47977952 Phaseolus vulgaris
Phvul.004G177600 5.0kb upstream 5.0kb upstream 5000 false Chr04: 47967034-47972033 Phaseolus vulgaris
Phvul.004G177600 5.0kb downstream 5.0kb downstream 10919 true Chr04: 47972034-47982952 Phaseolus vulgaris
Phvul.004G177600 5.0kb downstream 5.0kb downstream 5000 false Chr04: 47977953-47982952 Phaseolus vulgaris
Phvul.004G177600 10.0kb upstream 10.0kb upstream 15919 true Chr04: 47962034-47977952 Phaseolus vulgaris
Phvul.004G177600 10.0kb upstream 10.0kb upstream 10000 false Chr04: 47962034-47972033 Phaseolus vulgaris
Phvul.004G177600 10.0kb downstream 10.0kb downstream 15919 true Chr04: 47972034-47987952 Phaseolus vulgaris
Phvul.004G177600 10.0kb downstream 10.0kb downstream 10000 false Chr04: 47977953-47987952 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309356 5265 Fabidae View MSA
124073682 5270 Rosid View MSA
123741284 5271 Pentapetalae View MSA
122791344 5272 Eudicot View MSA
122042731 5273 Angiosperm View MSA
121351367 5274 Embryophyte View MSA
123382140 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.77246 0.0 7.72821   Low
cufflinks 10.8332 0.0 28.003    
cufflinks 38.5379 0.0 107.735 High High
cufflinks 2.71219 0.0 7.57292   Low
cufflinks 16.3296 0.0 42.5275    
cufflinks 30.3918 0.0 82.7773    
cufflinks 21.4041 0.0 56.7607    
cufflinks 13.1389 0.0 34.0716    
cufflinks 30.1483 0.0 82.2095 High  
cufflinks 18.064 0.0 47.3076    
cufflinks 12.6313 0.0 32.6819    

0 Strain