Gene : Phvul.004G163100 P. vulgaris v2.1
Defline:  (1 of 5) PTHR12161:SF14 - REGULATOR OF VPS4 Genomic Order:  1673
Name:  ? Phvul.004G163100 Secondary Identifier:  ? PAC:37163042
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G163100 0.5kb upstream 0.5kb upstream 5641 true Chr04: 46722413-46728053 Phaseolus vulgaris
Phvul.004G163100 0.5kb upstream 0.5kb upstream 500 false Chr04: 46727554-46728053 Phaseolus vulgaris
Phvul.004G163100 0.5kb downstream 0.5kb downstream 5641 true Chr04: 46721913-46727553 Phaseolus vulgaris
Phvul.004G163100 0.5kb downstream 0.5kb downstream 500 false Chr04: 46721913-46722412 Phaseolus vulgaris
Phvul.004G163100 1.0kb upstream 1.0kb upstream 6141 true Chr04: 46722413-46728553 Phaseolus vulgaris
Phvul.004G163100 1.0kb upstream 1.0kb upstream 1000 false Chr04: 46727554-46728553 Phaseolus vulgaris
Phvul.004G163100 1.0kb downstream 1.0kb downstream 6141 true Chr04: 46721413-46727553 Phaseolus vulgaris
Phvul.004G163100 1.0kb downstream 1.0kb downstream 1000 false Chr04: 46721413-46722412 Phaseolus vulgaris
Phvul.004G163100 2.0kb upstream 2.0kb upstream 7141 true Chr04: 46722413-46729553 Phaseolus vulgaris
Phvul.004G163100 2.0kb upstream 2.0kb upstream 2000 false Chr04: 46727554-46729553 Phaseolus vulgaris
Phvul.004G163100 2.0kb downstream 2.0kb downstream 7141 true Chr04: 46720413-46727553 Phaseolus vulgaris
Phvul.004G163100 2.0kb downstream 2.0kb downstream 2000 false Chr04: 46720413-46722412 Phaseolus vulgaris
Phvul.004G163100 5.0kb upstream 5.0kb upstream 10141 true Chr04: 46722413-46732553 Phaseolus vulgaris
Phvul.004G163100 5.0kb upstream 5.0kb upstream 5000 false Chr04: 46727554-46732553 Phaseolus vulgaris
Phvul.004G163100 5.0kb downstream 5.0kb downstream 10141 true Chr04: 46717413-46727553 Phaseolus vulgaris
Phvul.004G163100 5.0kb downstream 5.0kb downstream 5000 false Chr04: 46717413-46722412 Phaseolus vulgaris
Phvul.004G163100 10.0kb upstream 10.0kb upstream 15141 true Chr04: 46722413-46737553 Phaseolus vulgaris
Phvul.004G163100 10.0kb upstream 10.0kb upstream 10000 false Chr04: 46727554-46737553 Phaseolus vulgaris
Phvul.004G163100 10.0kb downstream 10.0kb downstream 15141 true Chr04: 46712413-46727553 Phaseolus vulgaris
Phvul.004G163100 10.0kb downstream 10.0kb downstream 10000 false Chr04: 46712413-46722412 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299571 5265 Fabidae View MSA
124066649 5270 Rosid View MSA
123746994 5271 Pentapetalae View MSA
122787378 5272 Eudicot View MSA
122041860 5273 Angiosperm View MSA
121351542 5274 Embryophyte View MSA
123382216 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.41728 0.0 13.4713   Low
cufflinks 7.17432 0.0 24.8037    
cufflinks 5.88441 0.0 18.094    
cufflinks 5.01693 0.0 16.0018   Low
cufflinks 9.67751 0.0 32.1452    
cufflinks 10.5932 0.0 34.2493    
cufflinks 12.0835 0.0 38.6947    
cufflinks 12.5247 0.0 40.2089    
cufflinks 12.4712 0.0 39.9127    
cufflinks 11.3107 0.0 36.605    
cufflinks 10.7275 0.0 30.5363    

0 Strain