Gene : Phvul.004G164700 P. vulgaris v2.1
Defline:  (1 of 5) PTHR12446:SF14 - PROTEIN LIN-54 HOMOLOG Genomic Order:  1690
Name:  ? Phvul.004G164700 Secondary Identifier:  ? PAC:37161782
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G164700 0.5kb upstream 0.5kb upstream 7733 true Chr04: 46886355-46894087 Phaseolus vulgaris
Phvul.004G164700 0.5kb upstream 0.5kb upstream 500 false Chr04: 46886355-46886854 Phaseolus vulgaris
Phvul.004G164700 0.5kb downstream 0.5kb downstream 7733 true Chr04: 46886855-46894587 Phaseolus vulgaris
Phvul.004G164700 0.5kb downstream 0.5kb downstream 500 false Chr04: 46894088-46894587 Phaseolus vulgaris
Phvul.004G164700 1.0kb upstream 1.0kb upstream 8233 true Chr04: 46885855-46894087 Phaseolus vulgaris
Phvul.004G164700 1.0kb upstream 1.0kb upstream 1000 false Chr04: 46885855-46886854 Phaseolus vulgaris
Phvul.004G164700 1.0kb downstream 1.0kb downstream 8233 true Chr04: 46886855-46895087 Phaseolus vulgaris
Phvul.004G164700 1.0kb downstream 1.0kb downstream 1000 false Chr04: 46894088-46895087 Phaseolus vulgaris
Phvul.004G164700 2.0kb upstream 2.0kb upstream 9233 true Chr04: 46884855-46894087 Phaseolus vulgaris
Phvul.004G164700 2.0kb upstream 2.0kb upstream 2000 false Chr04: 46884855-46886854 Phaseolus vulgaris
Phvul.004G164700 2.0kb downstream 2.0kb downstream 9233 true Chr04: 46886855-46896087 Phaseolus vulgaris
Phvul.004G164700 2.0kb downstream 2.0kb downstream 2000 false Chr04: 46894088-46896087 Phaseolus vulgaris
Phvul.004G164700 5.0kb upstream 5.0kb upstream 12233 true Chr04: 46881855-46894087 Phaseolus vulgaris
Phvul.004G164700 5.0kb upstream 5.0kb upstream 5000 false Chr04: 46881855-46886854 Phaseolus vulgaris
Phvul.004G164700 5.0kb downstream 5.0kb downstream 12233 true Chr04: 46886855-46899087 Phaseolus vulgaris
Phvul.004G164700 5.0kb downstream 5.0kb downstream 5000 false Chr04: 46894088-46899087 Phaseolus vulgaris
Phvul.004G164700 10.0kb upstream 10.0kb upstream 17233 true Chr04: 46876855-46894087 Phaseolus vulgaris
Phvul.004G164700 10.0kb upstream 10.0kb upstream 10000 false Chr04: 46876855-46886854 Phaseolus vulgaris
Phvul.004G164700 10.0kb downstream 10.0kb downstream 17233 true Chr04: 46886855-46904087 Phaseolus vulgaris
Phvul.004G164700 10.0kb downstream 10.0kb downstream 10000 false Chr04: 46894088-46904087 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307054 5265 Fabidae View MSA
124069206 5270 Rosid View MSA
123746618 5271 Pentapetalae View MSA
122795390 5272 Eudicot View MSA
122042831 5273 Angiosperm View MSA
121349847 5274 Embryophyte View MSA
123426596 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.37665 0.0 7.14876    
cufflinks 3.84253 0.0 10.9603   High
cufflinks 2.67786 0.0 7.95518    
cufflinks 1.43458 0.0 4.58118   Low
cufflinks 2.59033 0.0 7.7735    
cufflinks 2.5097 0.0 7.50825    
cufflinks 2.64159 0.0 7.82197    
cufflinks 2.4646 0.0 7.34717    
cufflinks 2.03468 0.0 6.21658    
cufflinks 3.76648 0.0 10.7632   High
cufflinks 2.46579 0.0 7.40504    

0 Strain