Gene : Phvul.007G117900 P. vulgaris v2.1
Defline:  (1 of 1) K13093 - HIV Tat-specific factor 1 (HTATSF1) Genomic Order:  1130
Name:  ? Phvul.007G117900 Secondary Identifier:  ? PAC:37166891
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G117900 0.5kb upstream 0.5kb upstream 11483 true Chr07: 16973200-16984682 Phaseolus vulgaris
Phvul.007G117900 0.5kb upstream 0.5kb upstream 500 false Chr07: 16984183-16984682 Phaseolus vulgaris
Phvul.007G117900 0.5kb downstream 0.5kb downstream 11483 true Chr07: 16972700-16984182 Phaseolus vulgaris
Phvul.007G117900 0.5kb downstream 0.5kb downstream 500 false Chr07: 16972700-16973199 Phaseolus vulgaris
Phvul.007G117900 1.0kb upstream 1.0kb upstream 11983 true Chr07: 16973200-16985182 Phaseolus vulgaris
Phvul.007G117900 1.0kb upstream 1.0kb upstream 1000 false Chr07: 16984183-16985182 Phaseolus vulgaris
Phvul.007G117900 1.0kb downstream 1.0kb downstream 11983 true Chr07: 16972200-16984182 Phaseolus vulgaris
Phvul.007G117900 1.0kb downstream 1.0kb downstream 1000 false Chr07: 16972200-16973199 Phaseolus vulgaris
Phvul.007G117900 2.0kb upstream 2.0kb upstream 12983 true Chr07: 16973200-16986182 Phaseolus vulgaris
Phvul.007G117900 2.0kb upstream 2.0kb upstream 2000 false Chr07: 16984183-16986182 Phaseolus vulgaris
Phvul.007G117900 2.0kb downstream 2.0kb downstream 12983 true Chr07: 16971200-16984182 Phaseolus vulgaris
Phvul.007G117900 2.0kb downstream 2.0kb downstream 2000 false Chr07: 16971200-16973199 Phaseolus vulgaris
Phvul.007G117900 5.0kb upstream 5.0kb upstream 15983 true Chr07: 16973200-16989182 Phaseolus vulgaris
Phvul.007G117900 5.0kb upstream 5.0kb upstream 5000 false Chr07: 16984183-16989182 Phaseolus vulgaris
Phvul.007G117900 5.0kb downstream 5.0kb downstream 15983 true Chr07: 16968200-16984182 Phaseolus vulgaris
Phvul.007G117900 5.0kb downstream 5.0kb downstream 5000 false Chr07: 16968200-16973199 Phaseolus vulgaris
Phvul.007G117900 10.0kb upstream 10.0kb upstream 20983 true Chr07: 16973200-16994182 Phaseolus vulgaris
Phvul.007G117900 10.0kb upstream 10.0kb upstream 10000 false Chr07: 16984183-16994182 Phaseolus vulgaris
Phvul.007G117900 10.0kb downstream 10.0kb downstream 20983 true Chr07: 16963200-16984182 Phaseolus vulgaris
Phvul.007G117900 10.0kb downstream 10.0kb downstream 10000 false Chr07: 16963200-16973199 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299213 5265 Fabidae View MSA
124064706 5270 Rosid View MSA
123741272 5271 Pentapetalae View MSA
122787667 5272 Eudicot View MSA
122045065 5273 Angiosperm View MSA
121347459 5274 Embryophyte View MSA
123427935 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.67962 0.0 23.0435    
cufflinks 9.63397 0.0 25.4246    
cufflinks 9.95673 0.0 26.1892    
cufflinks 5.12905 0.0 14.3828   Low
cufflinks 7.88304 0.0 21.2475    
cufflinks 9.23924 0.0 24.4067    
cufflinks 10.5773 0.0 27.7045    
cufflinks 11.2442 0.0 29.3222    
cufflinks 11.4202 0.0 29.8424    
cufflinks 12.9067 0.0 33.6067   High
cufflinks 8.70874 0.0 23.2171    

0 Strain