Gene : Phvul.004G170000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR13872:SF1 - DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT STT3B Genomic Order:  1743
Name:  ? Phvul.004G170000 Secondary Identifier:  ? PAC:37161693
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G170000 0.5kb upstream 0.5kb upstream 9489 true Chr04: 47350923-47360411 Phaseolus vulgaris
Phvul.004G170000 0.5kb upstream 0.5kb upstream 500 false Chr04: 47359912-47360411 Phaseolus vulgaris
Phvul.004G170000 0.5kb downstream 0.5kb downstream 9489 true Chr04: 47350423-47359911 Phaseolus vulgaris
Phvul.004G170000 0.5kb downstream 0.5kb downstream 500 false Chr04: 47350423-47350922 Phaseolus vulgaris
Phvul.004G170000 1.0kb upstream 1.0kb upstream 9989 true Chr04: 47350923-47360911 Phaseolus vulgaris
Phvul.004G170000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 47359912-47360911 Phaseolus vulgaris
Phvul.004G170000 1.0kb downstream 1.0kb downstream 9989 true Chr04: 47349923-47359911 Phaseolus vulgaris
Phvul.004G170000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 47349923-47350922 Phaseolus vulgaris
Phvul.004G170000 2.0kb upstream 2.0kb upstream 10989 true Chr04: 47350923-47361911 Phaseolus vulgaris
Phvul.004G170000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 47359912-47361911 Phaseolus vulgaris
Phvul.004G170000 2.0kb downstream 2.0kb downstream 10989 true Chr04: 47348923-47359911 Phaseolus vulgaris
Phvul.004G170000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 47348923-47350922 Phaseolus vulgaris
Phvul.004G170000 5.0kb upstream 5.0kb upstream 13989 true Chr04: 47350923-47364911 Phaseolus vulgaris
Phvul.004G170000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 47359912-47364911 Phaseolus vulgaris
Phvul.004G170000 5.0kb downstream 5.0kb downstream 13989 true Chr04: 47345923-47359911 Phaseolus vulgaris
Phvul.004G170000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 47345923-47350922 Phaseolus vulgaris
Phvul.004G170000 10.0kb upstream 10.0kb upstream 18989 true Chr04: 47350923-47369911 Phaseolus vulgaris
Phvul.004G170000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 47359912-47369911 Phaseolus vulgaris
Phvul.004G170000 10.0kb downstream 10.0kb downstream 18989 true Chr04: 47340923-47359911 Phaseolus vulgaris
Phvul.004G170000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 47340923-47350922 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041451 5273 Angiosperm View MSA
122299315 5265 Fabidae View MSA
124062338 5270 Rosid View MSA
123739535 5271 Pentapetalae View MSA
122792930 5272 Eudicot View MSA
121345608 5274 Embryophyte View MSA
123425256 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.5609 0.0 45.3939   Low
cufflinks 42.2892 0.0 112.919 High High
cufflinks 33.1533 0.0 87.1527    
cufflinks 24.6203 0.0 63.7839    
cufflinks 27.1627 0.0 70.5801    
cufflinks 29.267 0.0 76.3837    
cufflinks 28.9124 0.0 75.3766 High  
cufflinks 25.5425 0.0 66.4132    
cufflinks 43.8426 0.0 116.84 High High
cufflinks 34.3723 0.0 90.4406    
cufflinks 34.6129 0.0 90.8828 High  

0 Strain