Gene : Phvul.004G170500 P. vulgaris v2.1
Defline:  (1 of 3) PTHR21068:SF5 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MIL23-RELATED Genomic Order:  1748
Name:  ? Phvul.004G170500 Secondary Identifier:  ? PAC:37161983
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G170500 0.5kb upstream 0.5kb upstream 4152 true Chr04: 47405576-47409727 Phaseolus vulgaris
Phvul.004G170500 0.5kb upstream 0.5kb upstream 500 false Chr04: 47405576-47406075 Phaseolus vulgaris
Phvul.004G170500 0.5kb downstream 0.5kb downstream 4152 true Chr04: 47406076-47410227 Phaseolus vulgaris
Phvul.004G170500 0.5kb downstream 0.5kb downstream 500 false Chr04: 47409728-47410227 Phaseolus vulgaris
Phvul.004G170500 1.0kb upstream 1.0kb upstream 4652 true Chr04: 47405076-47409727 Phaseolus vulgaris
Phvul.004G170500 1.0kb upstream 1.0kb upstream 1000 false Chr04: 47405076-47406075 Phaseolus vulgaris
Phvul.004G170500 1.0kb downstream 1.0kb downstream 4652 true Chr04: 47406076-47410727 Phaseolus vulgaris
Phvul.004G170500 1.0kb downstream 1.0kb downstream 1000 false Chr04: 47409728-47410727 Phaseolus vulgaris
Phvul.004G170500 2.0kb upstream 2.0kb upstream 5652 true Chr04: 47404076-47409727 Phaseolus vulgaris
Phvul.004G170500 2.0kb upstream 2.0kb upstream 2000 false Chr04: 47404076-47406075 Phaseolus vulgaris
Phvul.004G170500 2.0kb downstream 2.0kb downstream 5652 true Chr04: 47406076-47411727 Phaseolus vulgaris
Phvul.004G170500 2.0kb downstream 2.0kb downstream 2000 false Chr04: 47409728-47411727 Phaseolus vulgaris
Phvul.004G170500 5.0kb upstream 5.0kb upstream 8652 true Chr04: 47401076-47409727 Phaseolus vulgaris
Phvul.004G170500 5.0kb upstream 5.0kb upstream 5000 false Chr04: 47401076-47406075 Phaseolus vulgaris
Phvul.004G170500 5.0kb downstream 5.0kb downstream 8652 true Chr04: 47406076-47414727 Phaseolus vulgaris
Phvul.004G170500 5.0kb downstream 5.0kb downstream 5000 false Chr04: 47409728-47414727 Phaseolus vulgaris
Phvul.004G170500 10.0kb upstream 10.0kb upstream 13652 true Chr04: 47396076-47409727 Phaseolus vulgaris
Phvul.004G170500 10.0kb upstream 10.0kb upstream 10000 false Chr04: 47396076-47406075 Phaseolus vulgaris
Phvul.004G170500 10.0kb downstream 10.0kb downstream 13652 true Chr04: 47406076-47419727 Phaseolus vulgaris
Phvul.004G170500 10.0kb downstream 10.0kb downstream 10000 false Chr04: 47409728-47419727 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026413 5273 Angiosperm View MSA
122296763 5265 Fabidae View MSA
124035773 5270 Rosid View MSA
123740247 5271 Pentapetalae View MSA
122787553 5272 Eudicot View MSA
121296318 5274 Embryophyte View MSA
123334500 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.38317 0.0 15.2307    
cufflinks 2.15613 0.0 6.74035   Low
cufflinks 14.6333 0.0 38.2038   High
cufflinks 4.51116 0.0 13.0884    
cufflinks 7.30819 0.0 20.1896    
cufflinks 2.7034 0.0 8.2175   Low
cufflinks 9.25824 0.0 24.8526    
cufflinks 2.467 0.0 7.5519   Low
cufflinks 8.47797 0.0 22.9135    
cufflinks 5.74707 0.0 16.1801    
cufflinks 6.20127 0.0 17.3484    

0 Strain