Gene : Phvul.007G106900 P. vulgaris v2.1
Defline:  (1 of 3) PTHR24073:SF486 - RAS-RELATED PROTEIN RABA6A-RELATED Genomic Order:  1079
Name:  ? Phvul.007G106900 Secondary Identifier:  ? PAC:37165423
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G106900 0.5kb upstream 0.5kb upstream 2667 true Chr07: 13013654-13016320 Phaseolus vulgaris
Phvul.007G106900 0.5kb upstream 0.5kb upstream 500 false Chr07: 13015821-13016320 Phaseolus vulgaris
Phvul.007G106900 0.5kb downstream 0.5kb downstream 2667 true Chr07: 13013154-13015820 Phaseolus vulgaris
Phvul.007G106900 0.5kb downstream 0.5kb downstream 500 false Chr07: 13013154-13013653 Phaseolus vulgaris
Phvul.007G106900 1.0kb upstream 1.0kb upstream 3167 true Chr07: 13013654-13016820 Phaseolus vulgaris
Phvul.007G106900 1.0kb upstream 1.0kb upstream 1000 false Chr07: 13015821-13016820 Phaseolus vulgaris
Phvul.007G106900 1.0kb downstream 1.0kb downstream 3167 true Chr07: 13012654-13015820 Phaseolus vulgaris
Phvul.007G106900 1.0kb downstream 1.0kb downstream 1000 false Chr07: 13012654-13013653 Phaseolus vulgaris
Phvul.007G106900 2.0kb upstream 2.0kb upstream 4167 true Chr07: 13013654-13017820 Phaseolus vulgaris
Phvul.007G106900 2.0kb upstream 2.0kb upstream 2000 false Chr07: 13015821-13017820 Phaseolus vulgaris
Phvul.007G106900 2.0kb downstream 2.0kb downstream 4167 true Chr07: 13011654-13015820 Phaseolus vulgaris
Phvul.007G106900 2.0kb downstream 2.0kb downstream 2000 false Chr07: 13011654-13013653 Phaseolus vulgaris
Phvul.007G106900 5.0kb upstream 5.0kb upstream 7167 true Chr07: 13013654-13020820 Phaseolus vulgaris
Phvul.007G106900 5.0kb upstream 5.0kb upstream 5000 false Chr07: 13015821-13020820 Phaseolus vulgaris
Phvul.007G106900 5.0kb downstream 5.0kb downstream 7167 true Chr07: 13008654-13015820 Phaseolus vulgaris
Phvul.007G106900 5.0kb downstream 5.0kb downstream 5000 false Chr07: 13008654-13013653 Phaseolus vulgaris
Phvul.007G106900 10.0kb upstream 10.0kb upstream 12167 true Chr07: 13013654-13025820 Phaseolus vulgaris
Phvul.007G106900 10.0kb upstream 10.0kb upstream 10000 false Chr07: 13015821-13025820 Phaseolus vulgaris
Phvul.007G106900 10.0kb downstream 10.0kb downstream 12167 true Chr07: 13003654-13015820 Phaseolus vulgaris
Phvul.007G106900 10.0kb downstream 10.0kb downstream 10000 false Chr07: 13003654-13013653 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122252289 5265 Fabidae Singleton cluster - no MSA
124072870 5270 Rosid View MSA
123751790 5271 Pentapetalae View MSA
122795613 5272 Eudicot View MSA
122049645 5273 Angiosperm View MSA
121348752 5274 Embryophyte View MSA
123426845 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.30291 0.0 11.4132    
cufflinks 4.61757 0.0 21.4061    
cufflinks 4.0026 0.0 18.695    
cufflinks 8.34999 0.0 36.2094   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 3.25001 0.0 15.67    
cufflinks 2.84178 0.0 13.9177    
cufflinks 2.05088 0.0 10.3841    
cufflinks 3.1096 0.0 15.1038    
cufflinks 1.30524 0.0 6.98157   Low
cufflinks 2.62449 0.0 13.0202    

0 Strain