Gene : Phvul.007G111600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31500:SF18 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN-RELATED Genomic Order:  1194
Name:  ? Phvul.007G111600 Secondary Identifier:  ? PAC:37165215
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G111600 0.5kb upstream 0.5kb upstream 7823 true Chr07: 20569441-20577263 Phaseolus vulgaris
Phvul.007G111600 0.5kb upstream 0.5kb upstream 500 false Chr07: 20576764-20577263 Phaseolus vulgaris
Phvul.007G111600 0.5kb downstream 0.5kb downstream 7823 true Chr07: 20568941-20576763 Phaseolus vulgaris
Phvul.007G111600 0.5kb downstream 0.5kb downstream 500 false Chr07: 20568941-20569440 Phaseolus vulgaris
Phvul.007G111600 1.0kb upstream 1.0kb upstream 8323 true Chr07: 20569441-20577763 Phaseolus vulgaris
Phvul.007G111600 1.0kb upstream 1.0kb upstream 1000 false Chr07: 20576764-20577763 Phaseolus vulgaris
Phvul.007G111600 1.0kb downstream 1.0kb downstream 8323 true Chr07: 20568441-20576763 Phaseolus vulgaris
Phvul.007G111600 1.0kb downstream 1.0kb downstream 1000 false Chr07: 20568441-20569440 Phaseolus vulgaris
Phvul.007G111600 2.0kb upstream 2.0kb upstream 9323 true Chr07: 20569441-20578763 Phaseolus vulgaris
Phvul.007G111600 2.0kb upstream 2.0kb upstream 2000 false Chr07: 20576764-20578763 Phaseolus vulgaris
Phvul.007G111600 2.0kb downstream 2.0kb downstream 9323 true Chr07: 20567441-20576763 Phaseolus vulgaris
Phvul.007G111600 2.0kb downstream 2.0kb downstream 2000 false Chr07: 20567441-20569440 Phaseolus vulgaris
Phvul.007G111600 5.0kb upstream 5.0kb upstream 12323 true Chr07: 20569441-20581763 Phaseolus vulgaris
Phvul.007G111600 5.0kb upstream 5.0kb upstream 5000 false Chr07: 20576764-20581763 Phaseolus vulgaris
Phvul.007G111600 5.0kb downstream 5.0kb downstream 12323 true Chr07: 20564441-20576763 Phaseolus vulgaris
Phvul.007G111600 5.0kb downstream 5.0kb downstream 5000 false Chr07: 20564441-20569440 Phaseolus vulgaris
Phvul.007G111600 10.0kb upstream 10.0kb upstream 17323 true Chr07: 20569441-20586763 Phaseolus vulgaris
Phvul.007G111600 10.0kb upstream 10.0kb upstream 10000 false Chr07: 20576764-20586763 Phaseolus vulgaris
Phvul.007G111600 10.0kb downstream 10.0kb downstream 17323 true Chr07: 20559441-20576763 Phaseolus vulgaris
Phvul.007G111600 10.0kb downstream 10.0kb downstream 10000 false Chr07: 20559441-20569440 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302074 5265 Fabidae View MSA
124071035 5270 Rosid View MSA
123753724 5271 Pentapetalae View MSA
122796118 5272 Eudicot View MSA
122049850 5273 Angiosperm View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.65193 0.0 18.4306    
cufflinks 10.8591 0.0 29.0002    
cufflinks 3.93737 0.0 11.5198   Low
cufflinks 7.97304 0.0 21.9933    
cufflinks 10.5148 0.0 28.1608    
cufflinks 3.56314 0.0 10.56   Low
cufflinks 14.0605 0.0 36.8623    
cufflinks 15.5115 0.0 40.4392    
cufflinks 16.1375 0.0 42.1474    
cufflinks 17.6216 0.0 45.792   High
cufflinks 10.4709 0.0 28.064    

0 Strain