Gene : Phvul.005G104300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR24015:SF644 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Genomic Order:  1038
Name:  ? Phvul.005G104300 Secondary Identifier:  ? PAC:37152295
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G104300 0.5kb upstream 0.5kb upstream 2864 true Chr05: 32378391-32381254 Phaseolus vulgaris
Phvul.005G104300 0.5kb upstream 0.5kb upstream 500 false Chr05: 32380755-32381254 Phaseolus vulgaris
Phvul.005G104300 0.5kb downstream 0.5kb downstream 2864 true Chr05: 32377891-32380754 Phaseolus vulgaris
Phvul.005G104300 0.5kb downstream 0.5kb downstream 500 false Chr05: 32377891-32378390 Phaseolus vulgaris
Phvul.005G104300 1.0kb upstream 1.0kb upstream 3364 true Chr05: 32378391-32381754 Phaseolus vulgaris
Phvul.005G104300 1.0kb upstream 1.0kb upstream 1000 false Chr05: 32380755-32381754 Phaseolus vulgaris
Phvul.005G104300 1.0kb downstream 1.0kb downstream 3364 true Chr05: 32377391-32380754 Phaseolus vulgaris
Phvul.005G104300 1.0kb downstream 1.0kb downstream 1000 false Chr05: 32377391-32378390 Phaseolus vulgaris
Phvul.005G104300 2.0kb upstream 2.0kb upstream 4364 true Chr05: 32378391-32382754 Phaseolus vulgaris
Phvul.005G104300 2.0kb upstream 2.0kb upstream 2000 false Chr05: 32380755-32382754 Phaseolus vulgaris
Phvul.005G104300 2.0kb downstream 2.0kb downstream 4364 true Chr05: 32376391-32380754 Phaseolus vulgaris
Phvul.005G104300 2.0kb downstream 2.0kb downstream 2000 false Chr05: 32376391-32378390 Phaseolus vulgaris
Phvul.005G104300 5.0kb upstream 5.0kb upstream 7364 true Chr05: 32378391-32385754 Phaseolus vulgaris
Phvul.005G104300 5.0kb upstream 5.0kb upstream 5000 false Chr05: 32380755-32385754 Phaseolus vulgaris
Phvul.005G104300 5.0kb downstream 5.0kb downstream 7364 true Chr05: 32373391-32380754 Phaseolus vulgaris
Phvul.005G104300 5.0kb downstream 5.0kb downstream 5000 false Chr05: 32373391-32378390 Phaseolus vulgaris
Phvul.005G104300 10.0kb upstream 10.0kb upstream 12364 true Chr05: 32378391-32390754 Phaseolus vulgaris
Phvul.005G104300 10.0kb upstream 10.0kb upstream 10000 false Chr05: 32380755-32390754 Phaseolus vulgaris
Phvul.005G104300 10.0kb downstream 10.0kb downstream 12364 true Chr05: 32368391-32380754 Phaseolus vulgaris
Phvul.005G104300 10.0kb downstream 10.0kb downstream 10000 false Chr05: 32368391-32378390 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313688 5265 Fabidae View MSA
124071698 5270 Rosid View MSA
123743334 5271 Pentapetalae View MSA
122796848 5272 Eudicot View MSA
122049142 5273 Angiosperm View MSA
121311265 5274 Embryophyte View MSA
123348580 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.838949 0.0 5.73826   Low
cufflinks 1.58582 0.0 9.09248   High
cufflinks 1.26093 0.0 4.85711    
cufflinks 0.963996 0.0 4.17935    
cufflinks 1.07988 0.0 4.53637    
cufflinks 1.50025 0.0 10.0203    
cufflinks 0.883469 0.0 3.779    
cufflinks 1.29237 0.0 4.89335    
cufflinks 0.741505 0.0 3.28762   Low
cufflinks 1.16331 0.0 8.64568    
cufflinks 1.852 0.0 10.6426   High

0 Strain