Gene : Phvul.007G246500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10742:SF260 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 Genomic Order:  2323
Name:  ? Phvul.007G246500 Secondary Identifier:  ? PAC:37166083
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6441 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G246500 0.5kb upstream 0.5kb upstream 6292 true Chr07: 36967125-36973416 Phaseolus vulgaris
Phvul.007G246500 0.5kb upstream 0.5kb upstream 500 false Chr07: 36972917-36973416 Phaseolus vulgaris
Phvul.007G246500 0.5kb downstream 0.5kb downstream 6292 true Chr07: 36966625-36972916 Phaseolus vulgaris
Phvul.007G246500 0.5kb downstream 0.5kb downstream 500 false Chr07: 36966625-36967124 Phaseolus vulgaris
Phvul.007G246500 1.0kb upstream 1.0kb upstream 6792 true Chr07: 36967125-36973916 Phaseolus vulgaris
Phvul.007G246500 1.0kb upstream 1.0kb upstream 1000 false Chr07: 36972917-36973916 Phaseolus vulgaris
Phvul.007G246500 1.0kb downstream 1.0kb downstream 6792 true Chr07: 36966125-36972916 Phaseolus vulgaris
Phvul.007G246500 1.0kb downstream 1.0kb downstream 1000 false Chr07: 36966125-36967124 Phaseolus vulgaris
Phvul.007G246500 2.0kb upstream 2.0kb upstream 7792 true Chr07: 36967125-36974916 Phaseolus vulgaris
Phvul.007G246500 2.0kb upstream 2.0kb upstream 2000 false Chr07: 36972917-36974916 Phaseolus vulgaris
Phvul.007G246500 2.0kb downstream 2.0kb downstream 7792 true Chr07: 36965125-36972916 Phaseolus vulgaris
Phvul.007G246500 2.0kb downstream 2.0kb downstream 2000 false Chr07: 36965125-36967124 Phaseolus vulgaris
Phvul.007G246500 5.0kb upstream 5.0kb upstream 10792 true Chr07: 36967125-36977916 Phaseolus vulgaris
Phvul.007G246500 5.0kb upstream 5.0kb upstream 5000 false Chr07: 36972917-36977916 Phaseolus vulgaris
Phvul.007G246500 5.0kb downstream 5.0kb downstream 10792 true Chr07: 36962125-36972916 Phaseolus vulgaris
Phvul.007G246500 5.0kb downstream 5.0kb downstream 5000 false Chr07: 36962125-36967124 Phaseolus vulgaris
Phvul.007G246500 10.0kb upstream 10.0kb upstream 15792 true Chr07: 36967125-36982916 Phaseolus vulgaris
Phvul.007G246500 10.0kb upstream 10.0kb upstream 10000 false Chr07: 36972917-36982916 Phaseolus vulgaris
Phvul.007G246500 10.0kb downstream 10.0kb downstream 15792 true Chr07: 36957125-36972916 Phaseolus vulgaris
Phvul.007G246500 10.0kb downstream 10.0kb downstream 10000 false Chr07: 36957125-36967124 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300122 5265 Fabidae View MSA
124068541 5270 Rosid View MSA
123736657 5271 Pentapetalae View MSA
122791898 5272 Eudicot View MSA
122046966 5273 Angiosperm View MSA
121350960 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.29305 0.0 31.4812   Low
cufflinks 13.3875 0.0 56.4573    
cufflinks 13.4584 0.0 58.5867    
cufflinks 9.06856 0.0 33.449   Low
cufflinks 14.041 0.0 55.7095    
cufflinks 14.14 0.0 60.2648    
cufflinks 14.4764 0.0 58.33    
cufflinks 13.7195 0.0 58.7483    
cufflinks 13.9154 0.0 55.1867    
cufflinks 19.0481 0.0 78.4417   High
cufflinks 14.0325 0.0 55.7738    

0 Strain