Gene : Phvul.005G107300 P. vulgaris v2.1
Defline:  (1 of 2) 2.1.2.5 - Glutamate formimidoyltransferase / Glutamate formyltransferase Genomic Order:  1069
Name:  ? Phvul.005G107300 Secondary Identifier:  ? PAC:37153479
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-3841 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G107300 0.5kb upstream 0.5kb upstream 2905 true Chr05: 32857095-32859999 Phaseolus vulgaris
Phvul.005G107300 0.5kb upstream 0.5kb upstream 500 false Chr05: 32859500-32859999 Phaseolus vulgaris
Phvul.005G107300 0.5kb downstream 0.5kb downstream 2905 true Chr05: 32856595-32859499 Phaseolus vulgaris
Phvul.005G107300 0.5kb downstream 0.5kb downstream 500 false Chr05: 32856595-32857094 Phaseolus vulgaris
Phvul.005G107300 1.0kb upstream 1.0kb upstream 3405 true Chr05: 32857095-32860499 Phaseolus vulgaris
Phvul.005G107300 1.0kb upstream 1.0kb upstream 1000 false Chr05: 32859500-32860499 Phaseolus vulgaris
Phvul.005G107300 1.0kb downstream 1.0kb downstream 3405 true Chr05: 32856095-32859499 Phaseolus vulgaris
Phvul.005G107300 1.0kb downstream 1.0kb downstream 1000 false Chr05: 32856095-32857094 Phaseolus vulgaris
Phvul.005G107300 2.0kb upstream 2.0kb upstream 4405 true Chr05: 32857095-32861499 Phaseolus vulgaris
Phvul.005G107300 2.0kb upstream 2.0kb upstream 2000 false Chr05: 32859500-32861499 Phaseolus vulgaris
Phvul.005G107300 2.0kb downstream 2.0kb downstream 4405 true Chr05: 32855095-32859499 Phaseolus vulgaris
Phvul.005G107300 2.0kb downstream 2.0kb downstream 2000 false Chr05: 32855095-32857094 Phaseolus vulgaris
Phvul.005G107300 5.0kb upstream 5.0kb upstream 7405 true Chr05: 32857095-32864499 Phaseolus vulgaris
Phvul.005G107300 5.0kb upstream 5.0kb upstream 5000 false Chr05: 32859500-32864499 Phaseolus vulgaris
Phvul.005G107300 5.0kb downstream 5.0kb downstream 7405 true Chr05: 32852095-32859499 Phaseolus vulgaris
Phvul.005G107300 5.0kb downstream 5.0kb downstream 5000 false Chr05: 32852095-32857094 Phaseolus vulgaris
Phvul.005G107300 10.0kb upstream 10.0kb upstream 12405 true Chr05: 32857095-32869499 Phaseolus vulgaris
Phvul.005G107300 10.0kb upstream 10.0kb upstream 10000 false Chr05: 32859500-32869499 Phaseolus vulgaris
Phvul.005G107300 10.0kb downstream 10.0kb downstream 12405 true Chr05: 32847095-32859499 Phaseolus vulgaris
Phvul.005G107300 10.0kb downstream 10.0kb downstream 10000 false Chr05: 32847095-32857094 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310861 5265 Fabidae View MSA
124070892 5270 Rosid View MSA
123745948 5271 Pentapetalae View MSA
122795317 5272 Eudicot View MSA
122048049 5273 Angiosperm View MSA
121344000 5274 Embryophyte View MSA
123424939 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.06114 0.0 12.0495    
cufflinks 7.72178 0.0 31.6424    
cufflinks 31.3267 0.0 100.047   High
cufflinks 3.26363 0.0 14.411    
cufflinks 4.39148 0.0 17.3818    
cufflinks 10.2618 0.0 39.7992    
cufflinks 0.971215 0.0 6.07483   Low
cufflinks 1.76894 0.0 10.6898    
cufflinks 0.926627 0.0 6.726   Low
cufflinks 4.81672 0.0 23.2025    
cufflinks 3.52474 0.0 14.6584    

0 Strain