Gene : Phvul.005G107600 P. vulgaris v2.1
Defline:  (1 of 466) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1072
Name:  ? Phvul.005G107600 Secondary Identifier:  ? PAC:37152393
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G107600 0.5kb upstream 0.5kb upstream 3016 true Chr05: 32892971-32895986 Phaseolus vulgaris
Phvul.005G107600 0.5kb upstream 0.5kb upstream 500 false Chr05: 32895487-32895986 Phaseolus vulgaris
Phvul.005G107600 0.5kb downstream 0.5kb downstream 3016 true Chr05: 32892471-32895486 Phaseolus vulgaris
Phvul.005G107600 0.5kb downstream 0.5kb downstream 500 false Chr05: 32892471-32892970 Phaseolus vulgaris
Phvul.005G107600 1.0kb upstream 1.0kb upstream 3516 true Chr05: 32892971-32896486 Phaseolus vulgaris
Phvul.005G107600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 32895487-32896486 Phaseolus vulgaris
Phvul.005G107600 1.0kb downstream 1.0kb downstream 3516 true Chr05: 32891971-32895486 Phaseolus vulgaris
Phvul.005G107600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 32891971-32892970 Phaseolus vulgaris
Phvul.005G107600 2.0kb upstream 2.0kb upstream 4516 true Chr05: 32892971-32897486 Phaseolus vulgaris
Phvul.005G107600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 32895487-32897486 Phaseolus vulgaris
Phvul.005G107600 2.0kb downstream 2.0kb downstream 4516 true Chr05: 32890971-32895486 Phaseolus vulgaris
Phvul.005G107600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 32890971-32892970 Phaseolus vulgaris
Phvul.005G107600 5.0kb upstream 5.0kb upstream 7516 true Chr05: 32892971-32900486 Phaseolus vulgaris
Phvul.005G107600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 32895487-32900486 Phaseolus vulgaris
Phvul.005G107600 5.0kb downstream 5.0kb downstream 7516 true Chr05: 32887971-32895486 Phaseolus vulgaris
Phvul.005G107600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 32887971-32892970 Phaseolus vulgaris
Phvul.005G107600 10.0kb upstream 10.0kb upstream 12516 true Chr05: 32892971-32905486 Phaseolus vulgaris
Phvul.005G107600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 32895487-32905486 Phaseolus vulgaris
Phvul.005G107600 10.0kb downstream 10.0kb downstream 12516 true Chr05: 32882971-32895486 Phaseolus vulgaris
Phvul.005G107600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 32882971-32892970 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303208 5265 Fabidae View MSA
124064756 5270 Rosid View MSA
123739873 5271 Pentapetalae View MSA
122787306 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.9741 0.0 12.4706   High
cufflinks 2.83157 0.0 9.26025    
cufflinks 3.00076 0.0 9.69973    
cufflinks 3.64278 0.0 11.6802   High
cufflinks 1.80988 0.0 6.2759   Low
cufflinks 1.88867 0.0 6.46985    
cufflinks 1.66162 0.0 5.7823   Low
cufflinks 3.17493 0.0 10.1847    
cufflinks 2.1527 0.0 7.30609    
cufflinks 2.33793 0.0 7.81052    
cufflinks 1.94018 0.0 6.67027    

0 Strain