Gene : Phvul.005G104600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31692:SF5 - EXPANSIN-B1-RELATED Genomic Order:  1041
Name:  ? Phvul.005G104600 Secondary Identifier:  ? PAC:37152230
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G104600 0.5kb upstream 0.5kb upstream 3779 true Chr05: 32416029-32419807 Phaseolus vulgaris
Phvul.005G104600 0.5kb upstream 0.5kb upstream 500 false Chr05: 32416029-32416528 Phaseolus vulgaris
Phvul.005G104600 0.5kb downstream 0.5kb downstream 3779 true Chr05: 32416529-32420307 Phaseolus vulgaris
Phvul.005G104600 0.5kb downstream 0.5kb downstream 500 false Chr05: 32419808-32420307 Phaseolus vulgaris
Phvul.005G104600 1.0kb upstream 1.0kb upstream 4279 true Chr05: 32415529-32419807 Phaseolus vulgaris
Phvul.005G104600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 32415529-32416528 Phaseolus vulgaris
Phvul.005G104600 1.0kb downstream 1.0kb downstream 4279 true Chr05: 32416529-32420807 Phaseolus vulgaris
Phvul.005G104600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 32419808-32420807 Phaseolus vulgaris
Phvul.005G104600 2.0kb upstream 2.0kb upstream 5279 true Chr05: 32414529-32419807 Phaseolus vulgaris
Phvul.005G104600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 32414529-32416528 Phaseolus vulgaris
Phvul.005G104600 2.0kb downstream 2.0kb downstream 5279 true Chr05: 32416529-32421807 Phaseolus vulgaris
Phvul.005G104600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 32419808-32421807 Phaseolus vulgaris
Phvul.005G104600 5.0kb upstream 5.0kb upstream 8279 true Chr05: 32411529-32419807 Phaseolus vulgaris
Phvul.005G104600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 32411529-32416528 Phaseolus vulgaris
Phvul.005G104600 5.0kb downstream 5.0kb downstream 8279 true Chr05: 32416529-32424807 Phaseolus vulgaris
Phvul.005G104600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 32419808-32424807 Phaseolus vulgaris
Phvul.005G104600 10.0kb upstream 10.0kb upstream 13279 true Chr05: 32406529-32419807 Phaseolus vulgaris
Phvul.005G104600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 32406529-32416528 Phaseolus vulgaris
Phvul.005G104600 10.0kb downstream 10.0kb downstream 13279 true Chr05: 32416529-32429807 Phaseolus vulgaris
Phvul.005G104600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 32419808-32429807 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040952 5273 Angiosperm View MSA
122296571 5265 Fabidae View MSA
124061780 5270 Rosid View MSA
123742041 5271 Pentapetalae View MSA
122787625 5272 Eudicot View MSA
123429074 5275 Viridiplantae View MSA
121351768 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.2338 0.0 4.17224    
cufflinks 7.74152 0.0 21.5043    
cufflinks 196.386 0.0 592.85 High High
cufflinks 3.80037 0.0 11.357    
cufflinks 83.2655 0.0 227.996 High  
cufflinks 55.6592 0.0 146.793 High  
cufflinks 32.7825 0.0 84.8928 High  
cufflinks 9.53623 0.0 25.9038    
cufflinks 14.491 0.0 38.1874    
cufflinks 0.0642809 0.0 0.283141 Low Low
cufflinks 45.7598 0.0 119.658 High  

0 Strain