Gene : Phvul.005G090800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR33399:SF2 - PSBQ-LIKE PROTEIN 2, CHLOROPLASTIC Genomic Order:  880
Name:  ? Phvul.005G090800 Secondary Identifier:  ? PAC:37153866
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0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G090800 0.5kb upstream 0.5kb upstream 2280 true Chr05: 25585389-25587668 Phaseolus vulgaris
Phvul.005G090800 0.5kb upstream 0.5kb upstream 500 false Chr05: 25587169-25587668 Phaseolus vulgaris
Phvul.005G090800 0.5kb downstream 0.5kb downstream 2280 true Chr05: 25584889-25587168 Phaseolus vulgaris
Phvul.005G090800 0.5kb downstream 0.5kb downstream 500 false Chr05: 25584889-25585388 Phaseolus vulgaris
Phvul.005G090800 1.0kb upstream 1.0kb upstream 2780 true Chr05: 25585389-25588168 Phaseolus vulgaris
Phvul.005G090800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 25587169-25588168 Phaseolus vulgaris
Phvul.005G090800 1.0kb downstream 1.0kb downstream 2780 true Chr05: 25584389-25587168 Phaseolus vulgaris
Phvul.005G090800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 25584389-25585388 Phaseolus vulgaris
Phvul.005G090800 2.0kb upstream 2.0kb upstream 3780 true Chr05: 25585389-25589168 Phaseolus vulgaris
Phvul.005G090800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 25587169-25589168 Phaseolus vulgaris
Phvul.005G090800 2.0kb downstream 2.0kb downstream 3780 true Chr05: 25583389-25587168 Phaseolus vulgaris
Phvul.005G090800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 25583389-25585388 Phaseolus vulgaris
Phvul.005G090800 5.0kb upstream 5.0kb upstream 6780 true Chr05: 25585389-25592168 Phaseolus vulgaris
Phvul.005G090800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 25587169-25592168 Phaseolus vulgaris
Phvul.005G090800 5.0kb downstream 5.0kb downstream 6780 true Chr05: 25580389-25587168 Phaseolus vulgaris
Phvul.005G090800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 25580389-25585388 Phaseolus vulgaris
Phvul.005G090800 10.0kb upstream 10.0kb upstream 11780 true Chr05: 25585389-25597168 Phaseolus vulgaris
Phvul.005G090800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 25587169-25597168 Phaseolus vulgaris
Phvul.005G090800 10.0kb downstream 10.0kb downstream 11780 true Chr05: 25575389-25587168 Phaseolus vulgaris
Phvul.005G090800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 25575389-25585388 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306753 5265 Fabidae View MSA
124061827 5270 Rosid View MSA
123739872 5271 Pentapetalae View MSA
122789340 5272 Eudicot View MSA
122046356 5273 Angiosperm View MSA
121310593 5274 Embryophyte View MSA
123348038 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.426126 0.0 1.67274    
cufflinks 1.69973 0.0 5.91883    
cufflinks 55.5445 0.0 143.765 High High
cufflinks 0.758023 0.0 2.85649    
cufflinks 0.789025 0.0 2.9774    
cufflinks 17.454 0.0 47.2733   High
cufflinks 0.0395538 0.0 0.193716 Low Low
cufflinks 0.0556834 0.0 0.261387 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 3.96533 0.0 12.5912    
cufflinks 0.916952 0.0 3.40791    

0 Strain