Gene : Phvul.007G239200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10438:SF297 - THIOREDOXIN-LIKE 3-2, CHLOROPLASTIC Genomic Order:  2247
Name:  ? Phvul.007G239200 Secondary Identifier:  ? PAC:37165220
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris THIOREDOX-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G239200 0.5kb upstream 0.5kb upstream 4940 true Chr07: 36312260-36317199 Phaseolus vulgaris
Phvul.007G239200 0.5kb upstream 0.5kb upstream 500 false Chr07: 36316700-36317199 Phaseolus vulgaris
Phvul.007G239200 0.5kb downstream 0.5kb downstream 4940 true Chr07: 36311760-36316699 Phaseolus vulgaris
Phvul.007G239200 0.5kb downstream 0.5kb downstream 500 false Chr07: 36311760-36312259 Phaseolus vulgaris
Phvul.007G239200 1.0kb upstream 1.0kb upstream 5440 true Chr07: 36312260-36317699 Phaseolus vulgaris
Phvul.007G239200 1.0kb upstream 1.0kb upstream 1000 false Chr07: 36316700-36317699 Phaseolus vulgaris
Phvul.007G239200 1.0kb downstream 1.0kb downstream 5440 true Chr07: 36311260-36316699 Phaseolus vulgaris
Phvul.007G239200 1.0kb downstream 1.0kb downstream 1000 false Chr07: 36311260-36312259 Phaseolus vulgaris
Phvul.007G239200 2.0kb upstream 2.0kb upstream 6440 true Chr07: 36312260-36318699 Phaseolus vulgaris
Phvul.007G239200 2.0kb upstream 2.0kb upstream 2000 false Chr07: 36316700-36318699 Phaseolus vulgaris
Phvul.007G239200 2.0kb downstream 2.0kb downstream 6440 true Chr07: 36310260-36316699 Phaseolus vulgaris
Phvul.007G239200 2.0kb downstream 2.0kb downstream 2000 false Chr07: 36310260-36312259 Phaseolus vulgaris
Phvul.007G239200 5.0kb upstream 5.0kb upstream 9440 true Chr07: 36312260-36321699 Phaseolus vulgaris
Phvul.007G239200 5.0kb upstream 5.0kb upstream 5000 false Chr07: 36316700-36321699 Phaseolus vulgaris
Phvul.007G239200 5.0kb downstream 5.0kb downstream 9440 true Chr07: 36307260-36316699 Phaseolus vulgaris
Phvul.007G239200 5.0kb downstream 5.0kb downstream 5000 false Chr07: 36307260-36312259 Phaseolus vulgaris
Phvul.007G239200 10.0kb upstream 10.0kb upstream 14440 true Chr07: 36312260-36326699 Phaseolus vulgaris
Phvul.007G239200 10.0kb upstream 10.0kb upstream 10000 false Chr07: 36316700-36326699 Phaseolus vulgaris
Phvul.007G239200 10.0kb downstream 10.0kb downstream 14440 true Chr07: 36302260-36316699 Phaseolus vulgaris
Phvul.007G239200 10.0kb downstream 10.0kb downstream 10000 false Chr07: 36302260-36312259 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310553 5265 Fabidae View MSA
124062487 5270 Rosid View MSA
123752896 5271 Pentapetalae View MSA
122787766 5272 Eudicot View MSA
122051543 5273 Angiosperm View MSA
121347731 5274 Embryophyte View MSA
123380608 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.19313 0.0 4.43091   Low
cufflinks 2.34104 0.0 8.16925    
cufflinks 2.45414 0.0 8.52654    
cufflinks 3.73445 0.0 12.3911   High
cufflinks 2.13107 0.0 7.56332    
cufflinks 2.60621 0.0 8.99945    
cufflinks 3.59929 0.0 11.9795   High
cufflinks 2.71852 0.0 9.32569    
cufflinks 3.18762 0.0 10.7472    
cufflinks 1.41033 0.0 5.17688   Low
cufflinks 2.11615 0.0 7.49084    

0 Strain