Gene : Phvul.005G082200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR16517//PTHR16517:SF32 - TUBBY-RELATED // SUBFAMILY NOT NAMED Genomic Order:  793
Name:  ? Phvul.005G082200 Secondary Identifier:  ? PAC:37154199
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G082200 0.5kb upstream 0.5kb upstream 5045 true Chr05: 19485097-19490141 Phaseolus vulgaris
Phvul.005G082200 0.5kb upstream 0.5kb upstream 500 false Chr05: 19485097-19485596 Phaseolus vulgaris
Phvul.005G082200 0.5kb downstream 0.5kb downstream 5045 true Chr05: 19485597-19490641 Phaseolus vulgaris
Phvul.005G082200 0.5kb downstream 0.5kb downstream 500 false Chr05: 19490142-19490641 Phaseolus vulgaris
Phvul.005G082200 1.0kb upstream 1.0kb upstream 5545 true Chr05: 19484597-19490141 Phaseolus vulgaris
Phvul.005G082200 1.0kb upstream 1.0kb upstream 1000 false Chr05: 19484597-19485596 Phaseolus vulgaris
Phvul.005G082200 1.0kb downstream 1.0kb downstream 5545 true Chr05: 19485597-19491141 Phaseolus vulgaris
Phvul.005G082200 1.0kb downstream 1.0kb downstream 1000 false Chr05: 19490142-19491141 Phaseolus vulgaris
Phvul.005G082200 2.0kb upstream 2.0kb upstream 6545 true Chr05: 19483597-19490141 Phaseolus vulgaris
Phvul.005G082200 2.0kb upstream 2.0kb upstream 2000 false Chr05: 19483597-19485596 Phaseolus vulgaris
Phvul.005G082200 2.0kb downstream 2.0kb downstream 6545 true Chr05: 19485597-19492141 Phaseolus vulgaris
Phvul.005G082200 2.0kb downstream 2.0kb downstream 2000 false Chr05: 19490142-19492141 Phaseolus vulgaris
Phvul.005G082200 5.0kb upstream 5.0kb upstream 9545 true Chr05: 19480597-19490141 Phaseolus vulgaris
Phvul.005G082200 5.0kb upstream 5.0kb upstream 5000 false Chr05: 19480597-19485596 Phaseolus vulgaris
Phvul.005G082200 5.0kb downstream 5.0kb downstream 9545 true Chr05: 19485597-19495141 Phaseolus vulgaris
Phvul.005G082200 5.0kb downstream 5.0kb downstream 5000 false Chr05: 19490142-19495141 Phaseolus vulgaris
Phvul.005G082200 10.0kb upstream 10.0kb upstream 14545 true Chr05: 19475597-19490141 Phaseolus vulgaris
Phvul.005G082200 10.0kb upstream 10.0kb upstream 10000 false Chr05: 19475597-19485596 Phaseolus vulgaris
Phvul.005G082200 10.0kb downstream 10.0kb downstream 14545 true Chr05: 19485597-19500141 Phaseolus vulgaris
Phvul.005G082200 10.0kb downstream 10.0kb downstream 10000 false Chr05: 19490142-19500141 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308151 5265 Fabidae View MSA
124061146 5270 Rosid View MSA
123740168 5271 Pentapetalae View MSA
122785762 5272 Eudicot View MSA
122045291 5273 Angiosperm View MSA
123429062 5275 Viridiplantae View MSA
121310429 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 52.6347 0.0 138.493 High High
cufflinks 34.7731 0.0 90.0805 High  
cufflinks 23.3093 0.0 60.3774    
cufflinks 38.6986 0.0 100.585 High  
cufflinks 42.6237 0.0 111.07 High  
cufflinks 17.9468 0.0 46.7952   Low
cufflinks 19.9239 0.0 51.6549   Low
cufflinks 20.0944 0.0 52.1417   Low
cufflinks 24.3428 0.0 62.9372    
cufflinks 58.2883 0.0 154.61 High High
cufflinks 36.5812 0.0 94.9377 High  

0 Strain