Gene : Phvul.005G084000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31008:SF4 - COP1-INTERACTING PROTEIN 7 (CIP7) Genomic Order:  840
Name:  ? Phvul.005G084000 Secondary Identifier:  ? PAC:37153134
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G084000 0.5kb upstream 0.5kb upstream 8151 true Chr05: 21936560-21944710 Phaseolus vulgaris
Phvul.005G084000 0.5kb upstream 0.5kb upstream 500 false Chr05: 21944211-21944710 Phaseolus vulgaris
Phvul.005G084000 0.5kb downstream 0.5kb downstream 8151 true Chr05: 21936060-21944210 Phaseolus vulgaris
Phvul.005G084000 0.5kb downstream 0.5kb downstream 500 false Chr05: 21936060-21936559 Phaseolus vulgaris
Phvul.005G084000 1.0kb upstream 1.0kb upstream 8651 true Chr05: 21936560-21945210 Phaseolus vulgaris
Phvul.005G084000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 21944211-21945210 Phaseolus vulgaris
Phvul.005G084000 1.0kb downstream 1.0kb downstream 8651 true Chr05: 21935560-21944210 Phaseolus vulgaris
Phvul.005G084000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 21935560-21936559 Phaseolus vulgaris
Phvul.005G084000 2.0kb upstream 2.0kb upstream 9651 true Chr05: 21936560-21946210 Phaseolus vulgaris
Phvul.005G084000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 21944211-21946210 Phaseolus vulgaris
Phvul.005G084000 2.0kb downstream 2.0kb downstream 9651 true Chr05: 21934560-21944210 Phaseolus vulgaris
Phvul.005G084000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 21934560-21936559 Phaseolus vulgaris
Phvul.005G084000 5.0kb upstream 5.0kb upstream 12651 true Chr05: 21936560-21949210 Phaseolus vulgaris
Phvul.005G084000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 21944211-21949210 Phaseolus vulgaris
Phvul.005G084000 5.0kb downstream 5.0kb downstream 12651 true Chr05: 21931560-21944210 Phaseolus vulgaris
Phvul.005G084000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 21931560-21936559 Phaseolus vulgaris
Phvul.005G084000 10.0kb upstream 10.0kb upstream 17651 true Chr05: 21936560-21954210 Phaseolus vulgaris
Phvul.005G084000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 21944211-21954210 Phaseolus vulgaris
Phvul.005G084000 10.0kb downstream 10.0kb downstream 17651 true Chr05: 21926560-21944210 Phaseolus vulgaris
Phvul.005G084000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 21926560-21936559 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302091 5265 Fabidae View MSA
124068447 5270 Rosid View MSA
123751203 5271 Pentapetalae View MSA
122797098 5272 Eudicot View MSA
122048758 5273 Angiosperm View MSA
121350762 5274 Embryophyte View MSA
123381879 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.33822 0.0 4.00675   Low
cufflinks 4.95605 0.0 13.1205    
cufflinks 12.7766 0.0 33.1355    
cufflinks 5.4391 0.0 14.3611    
cufflinks 19.499 0.0 51.1494    
cufflinks 23.9375 0.0 64.1139   High
cufflinks 10.8027 0.0 27.9321    
cufflinks 2.66001 0.0 7.36891   Low
cufflinks 17.1447 0.0 44.9286    
cufflinks 15.7269 0.0 40.9722    
cufflinks 14.9492 0.0 38.8328    

0 Strain