Gene : Phvul.007G232000 P. vulgaris v2.1
Defline:  (1 of 1) K01703 - 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit (leuC) Genomic Order:  2177
Name:  ? Phvul.007G232000 Secondary Identifier:  ? PAC:37165839
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris BRANCHED-CHAIN-AA-SYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris LEUSYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G232000 0.5kb upstream 0.5kb upstream 10032 true Chr07: 35561833-35571864 Phaseolus vulgaris
Phvul.007G232000 0.5kb upstream 0.5kb upstream 500 false Chr07: 35561833-35562332 Phaseolus vulgaris
Phvul.007G232000 0.5kb downstream 0.5kb downstream 10032 true Chr07: 35562333-35572364 Phaseolus vulgaris
Phvul.007G232000 0.5kb downstream 0.5kb downstream 500 false Chr07: 35571865-35572364 Phaseolus vulgaris
Phvul.007G232000 1.0kb upstream 1.0kb upstream 10532 true Chr07: 35561333-35571864 Phaseolus vulgaris
Phvul.007G232000 1.0kb upstream 1.0kb upstream 1000 false Chr07: 35561333-35562332 Phaseolus vulgaris
Phvul.007G232000 1.0kb downstream 1.0kb downstream 10532 true Chr07: 35562333-35572864 Phaseolus vulgaris
Phvul.007G232000 1.0kb downstream 1.0kb downstream 1000 false Chr07: 35571865-35572864 Phaseolus vulgaris
Phvul.007G232000 2.0kb upstream 2.0kb upstream 11532 true Chr07: 35560333-35571864 Phaseolus vulgaris
Phvul.007G232000 2.0kb upstream 2.0kb upstream 2000 false Chr07: 35560333-35562332 Phaseolus vulgaris
Phvul.007G232000 2.0kb downstream 2.0kb downstream 11532 true Chr07: 35562333-35573864 Phaseolus vulgaris
Phvul.007G232000 2.0kb downstream 2.0kb downstream 2000 false Chr07: 35571865-35573864 Phaseolus vulgaris
Phvul.007G232000 5.0kb upstream 5.0kb upstream 14532 true Chr07: 35557333-35571864 Phaseolus vulgaris
Phvul.007G232000 5.0kb upstream 5.0kb upstream 5000 false Chr07: 35557333-35562332 Phaseolus vulgaris
Phvul.007G232000 5.0kb downstream 5.0kb downstream 14532 true Chr07: 35562333-35576864 Phaseolus vulgaris
Phvul.007G232000 5.0kb downstream 5.0kb downstream 5000 false Chr07: 35571865-35576864 Phaseolus vulgaris
Phvul.007G232000 10.0kb upstream 10.0kb upstream 19532 true Chr07: 35552333-35571864 Phaseolus vulgaris
Phvul.007G232000 10.0kb upstream 10.0kb upstream 10000 false Chr07: 35552333-35562332 Phaseolus vulgaris
Phvul.007G232000 10.0kb downstream 10.0kb downstream 19532 true Chr07: 35562333-35581864 Phaseolus vulgaris
Phvul.007G232000 10.0kb downstream 10.0kb downstream 10000 false Chr07: 35571865-35581864 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303896 5265 Fabidae View MSA
124064281 5270 Rosid View MSA
123737905 5271 Pentapetalae View MSA
122792861 5272 Eudicot View MSA
122047334 5273 Angiosperm View MSA
121347218 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.4261 0.0 95.0245 High  
cufflinks 42.945 0.0 112.862 High  
cufflinks 85.8491 0.0 239.969 High High
cufflinks 40.5657 0.0 105.918 High  
cufflinks 32.3083 0.0 83.8181    
cufflinks 40.4953 0.0 106.133 High  
cufflinks 23.254 0.0 60.1083   Low
cufflinks 28.1267 0.0 72.8433 High  
cufflinks 31.6623 0.0 82.1089 High  
cufflinks 30.0483 0.0 77.8713    
cufflinks 33.4139 0.0 86.751    

0 Strain