Gene : Phvul.005G083000 P. vulgaris v2.1
Defline:  (1 of 35) PF00560//PF13855 - Leucine Rich Repeat (LRR_1) // Leucine rich repeat (LRR_8) Genomic Order:  830
Name:  ? Phvul.005G083000 Secondary Identifier:  ? PAC:37153243
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G083000 0.5kb upstream 0.5kb upstream 8936 true Chr05: 21576649-21585584 Phaseolus vulgaris
Phvul.005G083000 0.5kb upstream 0.5kb upstream 500 false Chr05: 21576649-21577148 Phaseolus vulgaris
Phvul.005G083000 0.5kb downstream 0.5kb downstream 8936 true Chr05: 21577149-21586084 Phaseolus vulgaris
Phvul.005G083000 0.5kb downstream 0.5kb downstream 500 false Chr05: 21585585-21586084 Phaseolus vulgaris
Phvul.005G083000 1.0kb upstream 1.0kb upstream 9436 true Chr05: 21576149-21585584 Phaseolus vulgaris
Phvul.005G083000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 21576149-21577148 Phaseolus vulgaris
Phvul.005G083000 1.0kb downstream 1.0kb downstream 9436 true Chr05: 21577149-21586584 Phaseolus vulgaris
Phvul.005G083000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 21585585-21586584 Phaseolus vulgaris
Phvul.005G083000 2.0kb upstream 2.0kb upstream 10436 true Chr05: 21575149-21585584 Phaseolus vulgaris
Phvul.005G083000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 21575149-21577148 Phaseolus vulgaris
Phvul.005G083000 2.0kb downstream 2.0kb downstream 10436 true Chr05: 21577149-21587584 Phaseolus vulgaris
Phvul.005G083000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 21585585-21587584 Phaseolus vulgaris
Phvul.005G083000 5.0kb upstream 5.0kb upstream 13436 true Chr05: 21572149-21585584 Phaseolus vulgaris
Phvul.005G083000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 21572149-21577148 Phaseolus vulgaris
Phvul.005G083000 5.0kb downstream 5.0kb downstream 13436 true Chr05: 21577149-21590584 Phaseolus vulgaris
Phvul.005G083000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 21585585-21590584 Phaseolus vulgaris
Phvul.005G083000 10.0kb upstream 10.0kb upstream 18436 true Chr05: 21567149-21585584 Phaseolus vulgaris
Phvul.005G083000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 21567149-21577148 Phaseolus vulgaris
Phvul.005G083000 10.0kb downstream 10.0kb downstream 18436 true Chr05: 21577149-21595584 Phaseolus vulgaris
Phvul.005G083000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 21585585-21595584 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307241 5265 Fabidae View MSA
124061452 5270 Rosid View MSA
123738353 5271 Pentapetalae View MSA
122792030 5272 Eudicot View MSA
122042195 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121345842 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.22564 0.0 12.1204   Low
cufflinks 5.74974 0.0 16.0642    
cufflinks 4.76611 0.0 13.5396   Low
cufflinks 5.38923 0.0 15.2147    
cufflinks 8.85 0.0 23.9476    
cufflinks 5.84283 0.0 16.3053    
cufflinks 8.78943 0.0 23.6867    
cufflinks 8.38624 0.0 22.613    
cufflinks 7.76525 0.0 21.2006    
cufflinks 9.22306 0.0 24.7428   High
cufflinks 7.47453 0.0 20.4901    

0 Strain